Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2752 ATGGATTCGGTGGAGACGGAACCGCTCTTGTCAGGGTTTTCTGCAGGAGAAGAAACTCCTCGCTCAAATTCCAAGCACGTGTCCGATGGGGAACTTGAGAGAATTCTCACAGACGACACCCTCTCTTTCCTCGACCGTCTCGGGGCCGCCTTTTGGGTGGAGTTCAAGCTCCTCTTCTTCTTCGCCGCCCCTGCTGTGTTTGTCTACGTCGTCAACTGCGCCATGTCCATGTCCACGCAAATGTTCTCCGGTCACCTCGGTAATCTTGAACTCGCCGCCTCCTCCCTCGGCAACAACGGCATCCAACTCTTCGCTTATGGCCTCATGTTAGGCATGGGGAGTGCAGTTGAGACGCTATGCGGACAAGCATACGGTGCGCGGAAGTTCGGGATGCTAGGTATATACATGCAGCGCTCAACGGTGCTTCTTTCATTGGCCGGCATCCTTATGACCGTCATATACGTGTTAAGTGAGCCAATTTTACTCTTCCTCGGCGAGTCCGCGGAAATTGCGGCCGCATCGGCGCTTTTCGTGTACGGTTTGATTCCTCAGATCTTCGCGTACGCGGTGAACTTCCCTATCCAGAAGTTTATGCAGGCGCAGAGCATAGTGGCGCCGAGCGCATACATCTCAGCGGGGACGTTAGTGGTGCATCTGGTGCTGAGCTCGTTGGTGGTGTACAAGATTGGGTTGGGACTCTTGGGAGCGTCATTGACGCTGAGCCTGTCGTGGTGGATCATCGTGATTGCTCAGTTCGTGTACATCGTGAAGAGCCCGAAGTGCAAGCAGACGTGGCAGGGGTTCACGTTGCAGGCATTTTCCGGGTTACCGTCGTTCTTCAAGCTGTCTGCTGCTTCCGCCGTTATGCTGTGTTTGGAGACGTGGTATTTTCAAATTCTGGTGCTGCTCGCAGGCCTGCTTCCTCAACCTGAATTGGCCCTTGATTCGCTATCAGTCTGTACTGCACTTTCTGGCTGGTTTAACATGATCTCCGTAGGATTCCAAGCTGCCGCAAGCGTGAGGGTGGGTAACGAACTCGGGGCAGGAAATCCAAAATCAGCATCCTTTTCGGTGGTGGTGGTGACAGGGATTTCTTTCATCATATCAGCTATTATAGCAATAGTGATTCTTGCACTTAGGGATGTCATTAGCTATGCCTTCACAGGGGGTGAAGTAGTTGCTGCTGCAGTTTCAGATCTTTGCCCTCTGCTTGCTCTTTGTATTCTCCTCAATGGCGTCCAGCCCGTCTTATCTGGGGTGGCTGTTGGATGTGGTTGGCAAGCTTTCGTAGCTTATGTAAACGTGGGTTGTTATTATGGAGTTGGCTTACCATTGGGAGCGGTTCTAGGCTTTTATTTCGACTACGGTGCCAAGGGAATATGGCTGGGAATGCTTGGTGGCACAGCCATGCAAACAGTGATTCTATTGTGGGTTACATTTAGAACGAACTGGAATAAGGAGGTGGAGGAAGCAGCCAAGAGGTTGAGGAAATGGGAGGACAAGAAGGAGGAATTGCTAGACTAA 1524 0.5184 MDSVETEPLLSGFSAGEETPRSNSKHVSDGELERILTDDTLSFLDRLGAAFWVEFKLLFFFAAPAVFVYVVNCAMSMSTQMFSGHLGNLELAASSLGNNGIQLFAYGLMLGMGSAVETLCGQAYGARKFGMLGIYMQRSTVLLSLAGILMTVIYVLSEPILLFLGESAEIAAASALFVYGLIPQIFAYAVNFPIQKFMQAQSIVAPSAYISAGTLVVHLVLSSLVVYKIGLGLLGASLTLSLSWWIIVIAQFVYIVKSPKCKQTWQGFTLQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSVCTALSGWFNMISVGFQAAASVRVGNELGAGNPKSASFSVVVVTGISFIISAIIAIVILALRDVISYAFTGGEVVAAAVSDLCPLLALCILLNGVQPVLSGVAVGCGWQAFVAYVNVGCYYGVGLPLGAVLGFYFDYGAKGIWLGMLGGTAMQTVILLWVTFRTNWNKEVEEAAKRLRKWEDKKEELLD* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2752 507 Coils Coil 481 507 - -
Vra5g2752 507 Pfam MatE 286 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2752 507 Pfam MatE 64 222 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2752 507 CDD MATE_eukaryotic 54 490 IPR045069 GO:0042910|GO:1990961
Vra5g2752 507 PANTHER MULTIDRUG RESISTANCE PROTEIN 20 494 - -
Vra5g2752 507 TIGRFAM matE: MATE efflux family protein 64 461 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g2752 507 MobiDBLite consensus disorder prediction 1 29 - -
Vra5g2752 507 PANTHER PROTEIN DETOXIFICATION 20 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2752 Vra-Chr5 34684844 34694488 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2752 K03327 - gmx:100795338 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2752 5 34684844 34694488 Vra5g2752 5 34684844 34694488 ECH
Vra5g2752 5 34684844 34694488 Vra2g0957 2 9705547 9709905 PCT