Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0957 ATGGATTCTCAATCGGCGGAGAAGGAGGTTAACGAGCCATTGGCAGTACCAGAAGAATCGTTACCGCAACAACCTTCTTTTTCTCGATCTTTCAGTTCCAGACACGGGTCACAGTATGAACTCGAGAACCTACTCACAGACACCAGCATCCCTTACTCCAAGCGTATTGGTCCGGCAACATGGATCGAGTTCAAACTCCTCTTTCACCTCGCTGCTCCTGCTGTCATCGTCTACCTCATCAACTATGTCATGTCTATGTCCACACAAATTTTCTCCGGCCATCTCGGTAACCTCGAACTTGCCGCCTCTTCCCTCGGAAACAATGGCATCCAAATCTTCGCTTATGGTCTCATGTTGGGTATGGGAAGTGCCGTTGAGACGCTGTGCGGACAGGCGTACGGGGCGAAGAAATTCCACATGTTAGGTGTCTACCTGCAACGATCCACGGTGCTGCTCTCACTCGCGGGCGTTCTGCTAACCGTAATCTACGTCTTAGCGGAACCAATCCTGCTGTTTCTCGGCGAGTCGCCGCAAATCGCGTCGGCGGCGGCGCTTTTCGTGTACGGGCTCATCCCTCAGATCTTCGCGTACGCCGTGAACTTCCCCATCCAGAAGTTTCTCCAGGCGCAGAGCATCGTGGCTCCGAGCTCGTACATTTCATGCGCCACGCTCGTGTTCCACCTCGTGTTCAGTTGGTTGGCGGTGAATAAGCTGGGGATGGGCCTGTTTGGCGCCTCGCTCGTGCTCAGTCTCTCCTGGTGGGTCATCGTGCTGGCGCAGTTCGTTTACATCGTGAAGAGCGAGCGGTGCAAGCAGACTTGGGGCGGCTTCACCTTCGAAGCGTTTTCGGGGTTGCCGGAGTTTTTCAAACTGTCGGCGGCTTCCGCCGTTATGCTCTGCCTAGAGACGTGGTACTTCCAGATTCTGGTGCTGCTCGCGGGGTTGCTTCCTCAGCCTGAGTTGGCTCTCGATTCCCTTTCCATTTGCACCACACTGTCGGGATGGGTTTTCATGATCTCAGTTGGATTTAACGCAGCTGCAAGTGTAAGAGTGAGCAACGAGCTAGGAGCAAGAAATCCAAAATCAGCTTCATTTTCTGTGGTGGTAGTGACAGTGATATCTTTCATAATATCAGTTATTATAGCAGTGGTGATTTTGTCGCTAAGAGATGTCCTTAGCTATGCCTTCACTGAAGGCGAAGAGGTGGCTGCTGCGGTCTCAGATCTTTGTCCCCTCCTTGCCCTTTCCATTGTTCTCAACGGCATTCAACCTGTTTTGTCTGGGGTGGCTGTTGGATGTGGATGGCAAACTTTTGTTGCCTACGTAAACGTTGGTTGCTATTACGGAATTGGCATTCCATTGGGTGCTGTTATGGGTTTCTATTTCAAACTCAATGCAAAGGGAATATGGTTGGGAATGCTTGGTGGCACGGTTCTGCAAACAATTATTTTGATGTGGGTCACATTTAGAACTGATTGGAATAAAGAGGTTGAGGAAGCAGAAAAGAGGTTGAATGAGTGGGAGGACGTAAAGGAGCCACTCATCGTCAAGAACTGA 1557 0.51 MDSQSAEKEVNEPLAVPEESLPQQPSFSRSFSSRHGSQYELENLLTDTSIPYSKRIGPATWIEFKLLFHLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAASSLGNNGIQIFAYGLMLGMGSAVETLCGQAYGAKKFHMLGVYLQRSTVLLSLAGVLLTVIYVLAEPILLFLGESPQIASAAALFVYGLIPQIFAYAVNFPIQKFLQAQSIVAPSSYISCATLVFHLVFSWLAVNKLGMGLFGASLVLSLSWWVIVLAQFVYIVKSERCKQTWGGFTFEAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPQPELALDSLSICTTLSGWVFMISVGFNAAASVRVSNELGARNPKSASFSVVVVTVISFIISVIIAVVILSLRDVLSYAFTEGEEVAAAVSDLCPLLALSIVLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGAVMGFYFKLNAKGIWLGMLGGTVLQTIILMWVTFRTDWNKEVEEAEKRLNEWEDVKEPLIVKN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0957 518 TIGRFAM matE: MATE efflux family protein 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0957 518 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Vra2g0957 518 Coils Coil 490 510 - -
Vra2g0957 518 MobiDBLite consensus disorder prediction 1 32 - -
Vra2g0957 518 PANTHER PROTEIN DETOXIFICATION 18 504 - -
Vra2g0957 518 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0957 518 Pfam MatE 295 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra2g0957 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 18 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0957 Vra-Chr2 9705547 9709905 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0957 K03327 - gmx:100790437 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0957 2 9705547 9709905 Vra2g0957 2 9705547 9709905 ECH
Vra5g2752 5 34684844 34694488 Vra2g0957 2 9705547 9709905 PCT