Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2533 ATGACAGACAGGGTGTACCCTTCGGCAAAGCCTGCCGCAGCCGCCGCCAACCCCGCTTTCCCGGCGACCAAGGCACAACTCTACGGCGCCACCCGCCCCACCTACCGCCCGCAGCCTCACCACCGGAGACGTAGCAAGCGCGGGTGCTGCTGCACCTTCTGCTTCTGGCTGATCCTCACCGTGCTTGTCCTACTCCTCCTGATCGGCATCGCTGGCACCGTGTTCTACCTGCTCTACCGCCCCCACCGCCCTACCTTCACCGTGACGTCGCTGAAACTTTCGTACCTGAACCTCACCGCCTCCTCCACCCTTAACTCCCGGTTCGACGTCACAGTCTCCGCCACCAATCCCAACAAGAAGATCCTTTTCGCCTACGACCCCACCTCCATCTCCATCCTCTCCGGCGACGTCGACGTCGGCGACGGCACCGTCCCTGCCTTCCTGCACGGCAAGAAGAACACCACGCTCATCAAAACCTCCATTGTGAGCACCGGCAGCGCGCTCCAGAGCGACGACGCGTCGCGATTGAAGTCCAGCATGAAGAACAAGAACGGGTTGCCACTGAAGGTGAATTTGGAAACGAAAGTGAAGGCCAAGATGGGAAAATTGAAAACCCCGAAGGTCAGAATCAGAGTCTCCTGCGACGGAATCAGAGTGAATCTTCCCTCCGGCAAGAAACCGGCGACGGCGTCCACTTCGAACGCGAAGTGCAACGTGGATGTTAGATTCAAGATCTGGAAGTGGACGGTTTGA 753 0.5923 MTDRVYPSAKPAAAAANPAFPATKAQLYGATRPTYRPQPHHRRRSKRGCCCTFCFWLILTVLVLLLLIGIAGTVFYLLYRPHRPTFTVTSLKLSYLNLTASSTLNSRFDVTVSATNPNKKILFAYDPTSISILSGDVDVGDGTVPAFLHGKKNTTLIKTSIVSTGSALQSDDASRLKSSMKNKNGLPLKVNLETKVKAKMGKLKTPKVRIRVSCDGIRVNLPSGKKPATASTSNAKCNVDVRFKIWKWTV* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2533 250 PANTHER CHAPERONIN CPN60-LIKE PROTEIN 12 249 - -
Vra5g2533 250 Gene3D - 75 214 - -
Vra5g2533 250 Pfam Late embryogenesis abundant protein 111 214 IPR004864 -
Vra5g2533 250 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 12 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2533 Vra-Chr5 32182062 32183420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2533 24 241 EF-hand Containing Proteins AT5G21130 25.792 6.69e-19 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2533 - - gmx:100819194 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2533 5 32182062 32183420 Vra9g0252 9 1863067 1864270 PCT