Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2476 ATGGATTTCCGTGCCCCGCCGCCATCTCCCGTGGCCGCTGCCAGGCGAACGTCCTCGCTCTCCAACGACGACGTTTTCCGCCGATTCTTGGAGACCTCTCTCCGTCTCCCCAACATTAACAACAACCACCAAAATCCGCTTCCAAAGGTTGACTTTCGCTCCTTAGGTTCCGACGACGCTCTTCGTCACGTCATTTCGGACTCTTTCGCAACTGTCGGATGCTTTCAACTGCTCAACCATGGGATTCCACTGGACGTGATCGCGTCGCCGGCGGAAGCTTCCATCGCAATTTTCCAGGTGCCGCCGGAGAAGCGAGGCGGCGTGACGAGGTCAGTGGAGAGCCCGTGGGGTTTCGAGGAAGATGACGAATTCGTCTGGGGAAGAGATAAGGAGTTCAACCTCAGAATGCAGCAACTTTCGGCAGCCCGATATTCCAATTTCAATAAGAAGATGGAGAATCTTGTGGCAAGGATAGAGAAGGTGGCCGAGAAAATTTTGCAAGTGATATTCGAAGATTCTCCCCGAAAAGTTGCAAATTCTATGGAAATGATTGGTGGGATTGAACGTGGGACAGTTTGTTCTGTTTATAAGCACTGCTCTGATAAGACGTCAGGAGAATGTGGTAACTCTTTAAACTATGATGTGATTAGAATGGTGATGAGGGGAAACCGATACTCTCATTGCTTGTGCTTGCATCTATGTGGTGGGTCTTCTGAGTTTCAGGTTTACTCTAAGAAAGGTTGGCTCTCTTTCTTTCCAGAAAAAGGAGCCCTTGTAATCACCGCTGGAGACCAAACTCAGATGTTCAGTGATGGGCAGTACAAGCACGTGATTGGAAGGCCAATATTTAAAGGGGAGAAAGAGGACTGCATTTCAATGGCTTTCCTCTGTTCAGCGCCAAACAACAAGAGCAATTTTGAAGACAGTGGTGAAAGAACTATTTCACTGGGCTTGCAAGTCCTATTGGCCATGATTTTGACCCTTGTGTGTCATGTCCTGATTTGTCTCTAA 1011 0.4847 MDFRAPPPSPVAAARRTSSLSNDDVFRRFLETSLRLPNINNNHQNPLPKVDFRSLGSDDALRHVISDSFATVGCFQLLNHGIPLDVIASPAEASIAIFQVPPEKRGGVTRSVESPWGFEEDDEFVWGRDKEFNLRMQQLSAARYSNFNKKMENLVARIEKVAEKILQVIFEDSPRKVANSMEMIGGIERGTVCSVYKHCSDKTSGECGNSLNYDVIRMVMRGNRYSHCLCLHLCGGSSEFQVYSKKGWLSFFPEKGALVITAGDQTQMFSDGQYKHVIGRPIFKGEKEDCISMAFLCSAPNNKSNFEDSGERTISLGLQVLLAMILTLVCHVLICL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2476 336 PANTHER - 9 333 - -
Vra5g2476 336 Pfam non-haem dioxygenase in morphine synthesis N-terminal 47 111 IPR026992 -
Vra5g2476 336 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 333 - -
Vra5g2476 336 Coils Coil 144 164 - -
Vra5g2476 336 SUPERFAMILY Clavaminate synthase-like 25 303 - -
Vra5g2476 336 Gene3D - 16 311 IPR027443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2476 Vra-Chr5 31715526 31717380 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2476 - - pvu:PHAVU_005G166600g 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2476 5 31715526 31717380 Vra5g2476 5 31715526 31717380 ECH
Vra5g2476 5 31715526 31717380 Vra9g0181 9 1255102 1257256 PCT