Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2421 ATGGAGTTGATTTCAGGTCTACCGGAGGACGTTGCCCGAGACTGTTTAATTAGGGTTCCGTATGAGAAATTCGCGACGGTGGCATCCGTCTGCAAAGGTTGGAACTCGGAGGTTTACTCGCCGGAGTTTCACCGTCGGAGGAGAACCACAAAACACGCACAAAAAATCCTTGTCACTGTTCAATCTAAGATAGACTCCGAAAAAACCCGAATCGGCTTGCTTGCGAAGGCCTCTGCGAATCCGGTTTACCGGCTGAGCGTGTTCGAACCGGAGACGGGTCTATGGAGCGAGTTGCCCCTGGGACCCGAACTCGCTTCCGGGTTACCCATGTTCTGTCAGATTGCAGGTGTCGGGTACGAGCTTGTCGTTTTGGGCGGGTGGGACCCAGAATCGTGGAAAGCGTCGAATTCGGTTTTTATCTACAACTTTCTCTCAGCCAAGTGGCGGCGTGGGGCCGACATGCCGGGTGGGCCCCGAACGTTTTTCGCTTGCGCGTCTGATCAAAATCAGACGGTGTATGTAGCGGGCGGGCACGACGAGGAGAAGAACGCGCTGAAGTCCGCGCTTGCGTATGACGTAGCGAACGACGCGTGGGTCCCTCTCCCGGACATGTCACGCGAGCGCGACGAGTGCAAGGCCGTGTTCCGCCGTGGCGCGCTCAGCGTCGTGGGTGGATACTGCACGGAGATGCAGGGGCGGTTCGAGAAGAGCGCGGAGGTTTTCGACGTGGCCACTTGGAAGTGGGGCCCGGTGGAGGAGGAGTTCTTGGATGCGGCCGCGTGTCCTCGAACATGCGTGGACGGAGGCGATGGTGCTGATGGGGAAATGTACATGTGCCGCGGCGGTGACGTGGTGGTGTTGCGGGGAGACACATGGCGTAGGGTTGCGAAGGTACCGAGTGAGATTCGGAACGTTGCGTGCGTGGGAGTGTGGGAAGAGAGCATGTTTGTTATTGGGTCCAGTGGGTTTGGGGAACCGCATATGGGCTTTGTTTTGGATCTGAAGAATGGGGCTTGGGCCAAAGTGGCGAGCCCGGAGGAGTACACTGGGCATTTGCAATCAAGTTGTATTTTTGAAATCTAG 1083 0.5716 MELISGLPEDVARDCLIRVPYEKFATVASVCKGWNSEVYSPEFHRRRRTTKHAQKILVTVQSKIDSEKTRIGLLAKASANPVYRLSVFEPETGLWSELPLGPELASGLPMFCQIAGVGYELVVLGGWDPESWKASNSVFIYNFLSAKWRRGADMPGGPRTFFACASDQNQTVYVAGGHDEEKNALKSALAYDVANDAWVPLPDMSRERDECKAVFRRGALSVVGGYCTEMQGRFEKSAEVFDVATWKWGPVEEEFLDAAACPRTCVDGGDGADGEMYMCRGGDVVVLRGDTWRRVAKVPSEIRNVACVGVWEESMFVIGSSGFGEPHMGFVLDLKNGAWAKVASPEEYTGHLQSSCIFEI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2421 360 Gene3D - 44 356 IPR015915 GO:0005515
Vra5g2421 360 SUPERFAMILY Kelch motif 79 342 IPR015915 GO:0005515
Vra5g2421 360 Pfam Kelch motif 161 205 IPR006652 GO:0005515
Vra5g2421 360 Pfam Kelch motif 115 155 IPR006652 GO:0005515
Vra5g2421 360 PANTHER OS02G0208700 PROTEIN 1 360 IPR044595 GO:0080037|GO:2000762
Vra5g2421 360 SUPERFAMILY F-box domain 3 55 IPR036047 GO:0005515
Vra5g2421 360 SMART kelc_smart 120 168 IPR006652 GO:0005515
Vra5g2421 360 SMART kelc_smart 171 218 IPR006652 GO:0005515
Vra5g2421 360 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 360 - -
Vra5g2421 360 Pfam F-box domain 4 45 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2421 Vra-Chr5 31334926 31336408 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2421 - - gmx:100786398 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2421 5 31334926 31336408 Vra9g0128 9 849919 851485 PCT