Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2418 ATGGGTGTTTCTCTTCCTCCCAGAGAGGCTAACCTCTTCAAGCTTATTGTTAAATCCTATGAAACCAAACAATACAAAAAGGGCCTTAAAGCAGCCGATGCCATTTTGAAAAAATTCCCAGACCATGGAGAAACTTTATCAATGAAGGGGTTGACTTTGAATTGCATGGATCGTAAGTCCGAGGCATATGAATTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTTTATCGGTCGCACAGAGAATACAGGGAGGCAATAAAGTGCTATCGCAATGCATTGAAAATAGATCCTGACAATATTGAAATATTGCGGGACTTGTCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGACAACAACTTCTGACACTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAGTGCATCAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACTTTGGAAGATGATTATCCTCCAGAAAATGAACGGTGTGAACATGGAGAAATGCTTTTGTATAAGATCTCCTTGTTGGAAGAATGTGGATTATTCCAGAAAGCTCTTGAGGAGTTGCAAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCCTATAAAGAGCAGGAGGTCTCACTTCTAGTCAAGCTTGGTCGCTTAGAAGAAGGGGAGAAATTGTACCGCACATTACTTAGCATGAACCCTGACAATTATAGATATTATGAAGGCCTCCAAAAATGTGTTGGATTATATTCAGAAAATGGCCATTTTTCTCCTGATGAAATAGATCAGTTAGATGCCTTGTACAAAACTCTTGAGCAGCAATATAAGTGGTCTTCTGCTGTTAAGAGAATACCACTGGATTTCTTACAAGGTGACAAGTTTCGAGAAGCAGCAGATAGTTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTTTTCTCCGATCTTTCTTCGTTATACAATCAACCTAGGAAGGCAGACGTTTTGGACCAGATCATTCTTGAGTTAGAGAGTTCACTTAAGTCCACTGGTCAATACCCTGGACGGATGGAAAAAGAGCCACCTTCAACTCTGATGTGGACATTGTTCTTCTTGGCTCAGCATTATGACAGACTGGGCCAATATGAAATTGCTCTTTCTAAAATTGATGAGGCTATTTGTCACACGCCTACTGTCATCGATCTGTATTCGGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGTTGCTGCTGCTGCATTTGCAGACGAAGCTAGATGTATGGATCTCGCTGATCGATATGTAAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATCAGGTGGCTTTGGCGGAAAAAACTGCTGTATTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTAAAGAAATTTCTAGCTGTGGAGAAGCATTATGCTGATATTACAGAAGATCAATTTGATTTTCATTCATACTGCTTACGGAAAATGACATTGCGTCCATACGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCGCATGCATACTTTCATAAAGCAGCTGTTGGAGCTATCAGATGCTATATCAAATTGCATGATTTTCCTTCAAGGTCAACAGCCGAGGAAGATGATGACATGTCTAAGTTGCTTCCTTCACAGAAAAAGAAAATGAGGCAAAAACAAAGAAAGGCAGAAGCTAGAGCTAAGAAAGAGGCAGAAATAAAAAATGAAGAATCAAGTGCTGGTGGGGTATCAAAGTCTGGGAAACGGCATGCAAAACCTGTTGATCCTGATCCACGTGGTGAAAAATTGATGCAGGTTGAAGATCCGTTGTTGGAAGCCACAAAATACTTGAAGCTGCTTCAGAAGAATTCACCTGACTCATTGGAGACACACATTCTCTCTTTTGAGTTATATATGAGAAAACAGAAAATTTTACTTGCCTTCCAGGCTGTTAAGCAGTTACTGAGGTTGGATACCGAACACCCTGATTCTCATCGTTGTCTGATTAAATTCTTCAATAAAGTGGGATCCATGAATGTTCCTGTGACTGACAGTGAGAAACTTGTTTGGAGTGTCTTGGAAGCTGAGCGCCAAACGATTAGTCAGCTGCATGGGAAATCTCTGTTTGAGACAAATAATTCTTTCCTTGAAAAACATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGGGAAATGTTGTATGTTTTGGATCCCAACAGAAGGCCTGAGGCTGTCAAGTTGATTGAAGGGTCAACAAATAACCTTGTGCCAAGAAATGGTGTGCTTGGACCGATCGGGGAATGGAAACTTAAAGATTGTATTGCAGTTCATAAGCTTCTTGGAACAGTTCTTGTTGATGAGGATGCTGCATTAAGATGGAAAGAGCGTTGTGCTAAATTTTTCCCGTACTCCACCTACTTTGAGGGCAGTCGTAGATCTGCCTTTAATCAGATAGGCAAGAGCACTGAAAATGGGAGTTCTAACCATGTGGAATCCACCCCATCAAATGGGAAACTAGAGGCATTTAAAGATCTCACCATCTGA 2673 0.4104 MGVSLPPREANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSHREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSSASKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGLFQKALEELQKKELKIVDKLAYKEQEVSLLVKLGRLEEGEKLYRTLLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDQLDALYKTLEQQYKWSSAVKRIPLDFLQGDKFREAADSYIRPLLTKGVPSLFSDLSSLYNQPRKADVLDQIILELESSLKSTGQYPGRMEKEPPSTLMWTLFFLAQHYDRLGQYEIALSKIDEAICHTPTVIDLYSVKSRILKHAGDLVAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRPYVEMLKFQDQLHSHAYFHKAAVGAIRCYIKLHDFPSRSTAEEDDDMSKLLPSQKKKMRQKQRKAEARAKKEAEIKNEESSAGGVSKSGKRHAKPVDPDPRGEKLMQVEDPLLEATKYLKLLQKNSPDSLETHILSFELYMRKQKILLAFQAVKQLLRLDTEHPDSHRCLIKFFNKVGSMNVPVTDSEKLVWSVLEAERQTISQLHGKSLFETNNSFLEKHEDSLMHRAAFGEMLYVLDPNRRPEAVKLIEGSTNNLVPRNGVLGPIGEWKLKDCIAVHKLLGTVLVDEDAALRWKERCAKFFPYSTYFEGSRRSAFNQIGKSTENGSSNHVESTPSNGKLEAFKDLTI* 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2418 890 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 876 - -
Vra5g2418 890 SMART tpr_5 380 413 IPR019734 GO:0005515
Vra5g2418 890 SMART tpr_5 77 110 IPR019734 GO:0005515
Vra5g2418 890 SMART tpr_5 43 76 IPR019734 GO:0005515
Vra5g2418 890 MobiDBLite consensus disorder prediction 580 594 - -
Vra5g2418 890 PIRSF NAT_A 1 818 IPR021183 -
Vra5g2418 890 Gene3D - 2 503 - -
Vra5g2418 890 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Vra5g2418 890 MobiDBLite consensus disorder prediction 580 645 - -
Vra5g2418 890 Pfam TPR repeat 84 123 - -
Vra5g2418 890 Gene3D - 505 724 - -
Vra5g2418 890 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Vra5g2418 890 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Vra5g2418 890 SUPERFAMILY TPR-like 233 449 IPR011990 GO:0005515
Vra5g2418 890 MobiDBLite consensus disorder prediction 631 645 - -
Vra5g2418 890 PANTHER BNAC02G23120D PROTEIN 10 876 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2418 Vra-Chr5 31296876 31311718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2418 K20792 - gmx:100776968 1581.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2418 5 31296876 31311718 Vra5g2418 5 31296876 31311718 ECH
Vra5g2418 5 31296876 31311718 Vra9g0127 9 821594 834699 PCT