Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2403 ATGGACGTTGTTCTTCAAACCAGAGGCCTTCTCTCTCTCCCCACAAACCCCATTAACAAGGTTTCACTTTTACACCCCTCCCAAGGTTTAAGGCTCAGGCTTTTCTCACCAAAGCCAAAAATCCTTGCTGCATCTTCTCCTTCCTTCAATGGGTTCCAAAGACTTTCACCAAAACCCAATGTCTTTGCCCAAAGGGACAAAACTCAAAATTTATTCTTGTGCAGGGCTGAGGCTTCAGCAGCTGCAGCCTCCTTTGGGGAATCAGAAACTGAGAAACCCAAGATTTTTGGTGTTGAAGTTGCCACCTTGAAGAAGATTGTGCCTCTGGGGATGATGTTCTTCTGTATCCTCTTCAACTACACCATCTTGAGAGACACAAAGGATGTTTTGGTTGTGACGGCCAAAGGAAGCAGTGCTGAGATTATACCGTTTCTCAAAACTTGGGTCAACCTTCCCATGGCTATTGGCTTCATGTTGCTGTACACTAAGTTGGCTAATGTGTTGTCCAAACAAGCTCTGTTTTACTCTGTAATACTTCCCTTCATTGCCTTCTTTGGTGCGTTTGGTTTTGTTCTGTACCCTCTCAGCAATCATATCCACCCGGAGGCGTTTGCGGATAAGCTTCTTAATATCCTTGGTCCTCGGTTTCTTGGTCCTCTTGCAATTATGAGGATATGGAGCTTTTGTTTGTTCTATGTCATGGCTGAATTGTGGGGAAGTGTAGTCATTTCGGTGCTGTTTTGGGGATTTGCCAATCAGATAACAACTGTTGAGGAAGCAAAACGATTCTATCCTTTATTTGGACTTGGTGCCAATGTAGCCCTTGTGTTCTCTGGTCGAACAGTGAAATACTTTTCTAATCTTAGGAAGAATTTAGGTCCTGGAGTTGATGGTTGGGCCATCTCTCTAAAAGGAATGATGAGCATAGTTGTGGGCATGGGACTTGCAATCTGTTTAATATATTGGTGGGTGAATAACTATGTTCCACTTCCTACACGTAGCAAGAAGAAGAAGGAGAAGCCCAAAATGGGAACAATGGAGAGCATAAAATTTTTAGTGTCTTCAAAATACATAAGGGATCTTGCCACTTTAGTGGTTGCATATGGAATTAGCATTAATCTTGTTGAGGTTACGTGGAAATCAAAGCTCAAAGCTCAGTTTCCTAGCCCCAATGAATACTCATCTTTCATGGGAGACTTTTCAACTGCAACTGGAATTGCTACATTCACAATGATGCTTTTAAGCCAATTTATCTTTGACAAATATGGATGGGGAGTTGCTGCCAAGATCACCCCCACTGTTCTGCTTTTAACAGGAGTTGGTTTCTTCTCTCTCATATTATTTGGCGGCCCAATTGCTCCTGTTATCGGAAATCTGGGAATGACTCCACTGCTAGCTGCTGTATACGTGGGTGCATTGCAGAACATATTCAGCAAGAGTGCTAAGTACAGTTTATTCGATCCCTGCAAAGAAATGGCCTACATACCCTTGGATGAGGATACCAAGGTGAAGGGGAAGGCAGCCATTGATGTAGTGTGCAACCCATTGGGGAAATCTGGTGGAGCTCTAATTCAGCAGTTCATGATCTTAAGTTTTGGTTCACTGGCTAATTCTACTCCATATCTGGGAGGGGTGCTTCTGGTGATTGTTCTTGCCTGGTTATCGGCGGCCAAGTCTCTTGATTCCCAGTTTTCAGCTTTGCGTAGAGAAGAAGAGCTTGAGAAAGAGATGGAAAGAGCAGCTGCTGTCAAGATACCAGTGGTGGCTAAGGATGAAGATGGAAATGGTTCTCTTGCAGGTGTTCCACTGTTGAATCCAACAACTGGTGGTGATTCCTCAAGTACATTGAATTGA 1854 0.4358 MDVVLQTRGLLSLPTNPINKVSLLHPSQGLRLRLFSPKPKILAASSPSFNGFQRLSPKPNVFAQRDKTQNLFLCRAEASAAAASFGESETEKPKIFGVEVATLKKIVPLGMMFFCILFNYTILRDTKDVLVVTAKGSSAEIIPFLKTWVNLPMAIGFMLLYTKLANVLSKQALFYSVILPFIAFFGAFGFVLYPLSNHIHPEAFADKLLNILGPRFLGPLAIMRIWSFCLFYVMAELWGSVVISVLFWGFANQITTVEEAKRFYPLFGLGANVALVFSGRTVKYFSNLRKNLGPGVDGWAISLKGMMSIVVGMGLAICLIYWWVNNYVPLPTRSKKKKEKPKMGTMESIKFLVSSKYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKYGWGVAAKITPTVLLLTGVGFFSLILFGGPIAPVIGNLGMTPLLAAVYVGALQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILSFGSLANSTPYLGGVLLVIVLAWLSAAKSLDSQFSALRREEELEKEMERAAAVKIPVVAKDEDGNGSLAGVPLLNPTTGGDSSSTLN* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2403 617 Pfam TLC ATP/ADP transporter 92 564 IPR004667 GO:0005471|GO:0006862|GO:0016021
Vra5g2403 617 PANTHER - 1 596 IPR004667 GO:0005471|GO:0006862|GO:0016021
Vra5g2403 617 SUPERFAMILY MFS general substrate transporter 211 470 IPR036259 -
Vra5g2403 617 TIGRFAM AAA: ADP/ATP carrier protein family 98 564 IPR004667 GO:0005471|GO:0006862|GO:0016021
Vra5g2403 617 PANTHER ADP,ATP CARRIER PROTEIN 1 596 - -
Vra5g2403 617 MobiDBLite consensus disorder prediction 592 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2403 Vra-Chr5 31162191 31165754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2403 1 599 Organic Solute Cotransporters AT1G80300 81.773 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2403 K03301 - gmx:100775892 1098.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2403 5 31162191 31165754 Vra5g2403 5 31162191 31165754 ECH
Vra5g2403 5 31162191 31165754 Vra9g0116 9 723903 727839 PCT