Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2402 ATGATGGTGAGGGGAGGACAGTGCTTCGAGAAACTTCGGCGGTTTGCTCGGACGGTTTTCTTCGTGGCGGCATTGGTGGCGTCGCTGCTCGTGACGTCGCTGCCTGTGCTCGTCGCGGTTGTTGACGTGCTGGTCCCTTGCGTTCTCATTTCCAGCTTCACCTGTGTCAAGTGCTACGGCTTCAAGGAGCATTTGCGTCGTTACACTTTCAAGAGCTCCTTGATGGATATTCCTCTCGTTTCGGTCGTACGATCCTTCATCATTATCTGTGTTTATTCTATTTGTGATGGCCCGGCTCTTTCGCATGGTCCTTATCTTGGAACTGTGACACTGTCTTCCTTTATCTCAATTGTCCTCCTATCTGTCAAAGCCTGTGTTTTCTCAGTAAATTCTCAGATTGAAGCAGAAGCTACTATTTCCCCCACAAGACAGAGACTCCATTTAAAGAAGTCATGGGGAATGCCTGTCTTATTTCTCTCGTCAGTTGTGTTTGCTCTTGGTCACACTGTGGTTGCTTATAGAACCAGCTGCAGAGCAAGGAGGAAGCTCATGTTTCATAGAGTTGACCCCGAAGCGAAGGTCCCTCGGTCTCCAGTTCCCTCCGAGGGCAGAACCCCCAAAAGTGACGGTGAAATGAAAAGGAAGCCTTTTGGAACAGCTCGTGATGAAGAACTGCCACTTAGATTACTTGCAGATTCAGAGAGCTTATTCATCCCCTGCCAAGGTCTTACTCTCCATTACAAGCTCAGCTTGCCTGGTTCACCGCCACTTAACATGTCCTCAACATTTTGCTCCACTTCATCAGTGGCTGGGGGCTTGTCAAAGTTGAATAGACATTTGACTTGCATATCTCCAAAATCCCATCGGCAACTCTACCGGAGCTATAGCAATCAATTCTATGGATCATCTCTACATGCTCCTCTTTTAGATATTCCAGTAACCTCTCCCCATCTTAATGAAGAAATCCCTGTTTTGCATCTAGATGAAATTCGTGAAGATGAGGACACCATTAAATTAGAGTCTTTGTCTTCGGAGCAAAATGTAGAGGACATTGGTCAAGTAGGTATTATTTTGATACATGGGTTTGGTGGAGGCGTCTTCTCTTGGCGACATGTAATGGGACCTCTAGCCCGGCAAAGTAATTGCACAGTTGCGGCATTTGATAGGCCTGGTTGGGGATTGACTTCAAGACTGAGCCGGGAGGACTGGGAGAAAAAGGAATTGCCCAATCCTTACAAACTTGAAAGTCAGGTTGGTCTCCTTTTGTCTTTCTGTTCTGAGATTGGATTTTCTTCGGTTGTTCTAATTGGTCATGATGATGGAGGGTTGCTTGCTCTGATGGCTGCACAGAGAGTTCAATCATCAATGAATTCTTTCAACGTTACAGTGAAAGGGGTTGTATTGTTAAATGTTAACTTATCAAGGGAAGTTGTTCCTTCCTTTGCTAAAATCCTTCTGCATACATCTCTTGGAAAGAAACATTTGGTCCGTCCCTTACTAAGAACAGAAATCACCCATGTGGTGAATCGGCGGTCATGGTATGATGCTACCAAACTGACAACAGAAGTTTTGACTCTATATAAGGCTCCGCTATACGCAGAAGGATGGGATGAAGCGCTTCACGAGATTTGTAAATTGTCATCGGAAACCATCGTCTCTGCAAAAAATGCAGACACATTGCTACAGGCTGTAGAAGACATTCCAGTGTTGGTCATAGCCGGTGCCGAAGATTCACTCGTCTCAATGAAATATTGTCAAGCAATGGCCTCCAAATTTTTAAATTCTAGACTGGTTGCGATATCCGGATGTGGTCATCTACCCCACGAAGAGTGTCCAATGGCGTTGCTTGCGGCTATATCACCCTTTATTAATAAACTTTTCAATGTATATAACTCTGAAAGACAATAG 1908 0.4507 MMVRGGQCFEKLRRFARTVFFVAALVASLLVTSLPVLVAVVDVLVPCVLISSFTCVKCYGFKEHLRRYTFKSSLMDIPLVSVVRSFIIICVYSICDGPALSHGPYLGTVTLSSFISIVLLSVKACVFSVNSQIEAEATISPTRQRLHLKKSWGMPVLFLSSVVFALGHTVVAYRTSCRARRKLMFHRVDPEAKVPRSPVPSEGRTPKSDGEMKRKPFGTARDEELPLRLLADSESLFIPCQGLTLHYKLSLPGSPPLNMSSTFCSTSSVAGGLSKLNRHLTCISPKSHRQLYRSYSNQFYGSSLHAPLLDIPVTSPHLNEEIPVLHLDEIREDEDTIKLESLSSEQNVEDIGQVGIILIHGFGGGVFSWRHVMGPLARQSNCTVAAFDRPGWGLTSRLSREDWEKKELPNPYKLESQVGLLLSFCSEIGFSSVVLIGHDDGGLLALMAAQRVQSSMNSFNVTVKGVVLLNVNLSREVVPSFAKILLHTSLGKKHLVRPLLRTEITHVVNRRSWYDATKLTTEVLTLYKAPLYAEGWDEALHEICKLSSETIVSAKNADTLLQAVEDIPVLVIAGAEDSLVSMKYCQAMASKFLNSRLVAISGCGHLPHEECPMALLAAISPFINKLFNVYNSERQ* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2402 635 Pfam Alpha/beta hydrolase family 356 618 IPR000073 -
Vra5g2402 635 Pfam Cholesterol-capturing domain 60 132 IPR019498 -
Vra5g2402 635 Gene3D alpha/beta hydrolase 345 627 IPR029058 -
Vra5g2402 635 MobiDBLite consensus disorder prediction 192 218 - -
Vra5g2402 635 PANTHER HYDROLASE 3 633 - -
Vra5g2402 635 PRINTS Epoxide hydrolase signature 360 378 IPR000639 GO:0003824
Vra5g2402 635 PRINTS Epoxide hydrolase signature 435 448 IPR000639 GO:0003824
Vra5g2402 635 PRINTS Epoxide hydrolase signature 567 583 IPR000639 GO:0003824
Vra5g2402 635 PRINTS Epoxide hydrolase signature 600 622 IPR000639 GO:0003824
Vra5g2402 635 SUPERFAMILY alpha/beta-Hydrolases 356 625 IPR029058 -
Vra5g2402 635 PANTHER ALPHA/BETA FOLD HYDROLASE 3 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2402 Vra-Chr5 31146307 31151417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2402 2 626 Miscellaneous Gene Families AT1G80280 61.669 0.0 752
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2402 - - gmx:100775895 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2402 5 31146307 31151417 Vra9g0115 9 708519 713116 PCT