Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2055 ATGGTTGCAAATGGCTATTTTCCTCCTTTGTTCAGTGTGGCCCCAATGATGGACTGGACAGATCATCACTATAGGACTCTTGCACGTCTCTTGTCAAAGCACACATGGCTCTACACGGAGATGCTTGCTGCTGAAACAATTGTTTATCAAAAGGGAAATCTGGACAGATTCTTGGCATATTGTCCAGATCAACATCCTATTGTGCTTCAAATTGGTGGAAGTAATTTAGATAATTTGGCAAAAGCAACTGAACTGGCAAATGCGTATTGCTATGATGAGATCAACTTCAACTGTGGATGCCCAAGTCCTAGAGTAGCTGGACGTGGATGCTTTGGTGCACGTCTTATGCTTGATCCAAAGTTTGTTGCAGAGGCTATTTCATTGATTTTTGCCAATACAAATGTACCTGTTACTGTTAAATGTCGAATTGGTGTGGATGATCATGATTCCTACAATGAATTGTGTGATTTCATTTACAAGGTTTCTTCTCTGTCACCTGCCAAGCATTTCATAATTCACTCAAGGAAGGCATTGCTTAAGGGCCTTAGCCCAGCTGAAAATCGGAGTATTCCTCCACTGAAATATGAATACTTTTATGGCCTCTTACGAGACTTCCCTGACTTAACATTTACAATCAATGGGGGTATTACTAGTATTGATGAGGCCAATGGAGCTCTAAAGGCCGGGGCCCATGGTGTTATGGTTGGACGTGCTGCATACCATAACCCTTGGCATATTTTGGGACATGTTGATAGTGCAATTTATGGTGCACCAAGTAGTGATCTTACACGTCGTCAGGTTCTTGAGAAATATCAAGTATATGGGGACTCAGTATTAGGACAATATGGACTCGGCCCAACCGTGCGAGATATTGTGAAGCCTTTACTTGGTTTTTTCCATTCTGAGGCTGGGAATGGACTTTGGAAGCGCAAAGCAGATTCAGCAGTCCAAACTTGCACGACAATTAAATCATTTTTTGAAGAAACCCTTGTAGCAATTCCTGACTCGGTCTTGGATTCACCTGTTGCGGAACCACAATATGGTCGTGGAGATCTCTTTGCTGACATACACAACTTGCTACCTCCACCATACACAACAAGACAAGAGAATGTCATATAA 1119 0.4227 MVANGYFPPLFSVAPMMDWTDHHYRTLARLLSKHTWLYTEMLAAETIVYQKGNLDRFLAYCPDQHPIVLQIGGSNLDNLAKATELANAYCYDEINFNCGCPSPRVAGRGCFGARLMLDPKFVAEAISLIFANTNVPVTVKCRIGVDDHDSYNELCDFIYKVSSLSPAKHFIIHSRKALLKGLSPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSIDEANGALKAGAHGVMVGRAAYHNPWHILGHVDSAIYGAPSSDLTRRQVLEKYQVYGDSVLGQYGLGPTVRDIVKPLLGFFHSEAGNGLWKRKADSAVQTCTTIKSFFEETLVAIPDSVLDSPVAEPQYGRGDLFADIHNLLPPPYTTRQENVI* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2055 372 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 1 372 IPR004653 GO:0002943|GO:0017150
Vra5g2055 372 PIRSF Dus 2 345 IPR001269 GO:0008033|GO:0017150|GO:0050660
Vra5g2055 372 ProSitePatterns Uncharacterized protein family UPF0034 signature. 94 113 IPR018517 GO:0008033|GO:0017150|GO:0050660
Vra5g2055 372 SUPERFAMILY FMN-linked oxidoreductases 11 311 - -
Vra5g2055 372 Pfam Dihydrouridine synthase (Dus) 13 318 IPR035587 -
Vra5g2055 372 Gene3D - 259 323 - -
Vra5g2055 372 PANTHER TRNA-DIHYDROURIDINE SYNTHASE 1 372 - -
Vra5g2055 372 CDD DUS_like_FMN 11 244 IPR035587 -
Vra5g2055 372 Gene3D Aldolase class I 8 250 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2055 Vra-Chr5 26163559 26171775 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2055 K05539 - gmx:100785422 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0093 2 739058 743927 Vra5g2055 5 26163559 26171775 PCT