Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2038 ATGTCTCCAAAAAGTGTTTCATATCTTTCACTTTTCATCACCATGTTTGTCTCATCTGGGGTGTGTTTTGCCTCTTTCCTAGAAGACACATATCATTTAACTAATTATCAGCATTACTCTGTCAAACCAAACAATGAACATTTTGGTAACATCATGAGAAGGGCTTATGGATCCAACCCTTCTGCAAGGTCTCAGAGAATGGTCAGTGTTGATGACCATGGAGCCAAAGCTAATGATGGAAGAGATGACACTAAGGCATTTGAGAAGGCATGGAATGAGGCATGTTCTTCAGGGGGTGTTCTTGTTGTCCCACAAGCAAAAATCTATCATTTGAAACCAATAACTTTTTCAGGACCATGCCAACCAAACACTGCCTTCAGGGTCTATGGAACAATCAAAGCATGGCCTGATATATCAGCATATGGAAAAGAAAGACTACTCTGGATCATGTTTCAAAATCTCACCAATCTCAGGGTTGATGGTGGTGGCATCATCAATGGAAATGGCAGAAAATGGTGGCAGAACTCTTGCAAAACCAATGAAAAACTTCCATGCAGACATGCTCCAACTGCTGTGACATTCTATGGATGCAACAACCTGAAAGTGACAAACCTGAGATTCAAAAATGCACAACAAATGCATGTAAGGTTTCAAAAGTGCAACAATGTGACGGCTTCGAATTTGATCCTGAGAGCACCAGGGAACAGCCCCAACACTGATGGAATTCACGTCACACAGACAAACAATATTATCATAAGCAATAGCTCCATTGGGACAGGCGATGACTGCATTTCAATAGTGAGTGGGTCCGAGAATGTTCGAGTCATAGATGTTACGTGTGGACCAGGGCATGGAATCAGCATTGGAAGCTTAGGGGCTGGTAACTCAGAAGCTCAAGTGTCCAATGTGTTAGTGAACAGAGCCACCATAAGAGGAACCACTAATGGAGTTAGAATAAAGACTTGGCAGGGAGGTTCTGGATATGCGAGAAACATAAAATTTGAGAATATAGTAATGAGAAATGTGACAAATCCGATAATTGTAGATCAAAACTACTGTGACCAGGAGAAGCCATGCAAAGAGAAGGTCTCAGCAGTGCAACTGAGTAACATTGTGTACGAAAACATCAGAGGAACAAGTGCTTCGGAAGTGGCAATAAAATTTGATTGCAGCAAAAGTTTCCCATGCAAAGGAATATTCTTGCAAGATGTGATCTTAACAGCACAGAGCCATGGTGGCACAAAAACCATTGCTACGTGTGAAAATGTTAGATATGTTAATAGAGGAAAGTTTTTTCCTTCATGCTCTAGTTGA 1314 0.4125 MSPKSVSYLSLFITMFVSSGVCFASFLEDTYHLTNYQHYSVKPNNEHFGNIMRRAYGSNPSARSQRMVSVDDHGAKANDGRDDTKAFEKAWNEACSSGGVLVVPQAKIYHLKPITFSGPCQPNTAFRVYGTIKAWPDISAYGKERLLWIMFQNLTNLRVDGGGIINGNGRKWWQNSCKTNEKLPCRHAPTAVTFYGCNNLKVTNLRFKNAQQMHVRFQKCNNVTASNLILRAPGNSPNTDGIHVTQTNNIIISNSSIGTGDDCISIVSGSENVRVIDVTCGPGHGISIGSLGAGNSEAQVSNVLVNRATIRGTTNGVRIKTWQGGSGYARNIKFENIVMRNVTNPIIVDQNYCDQEKPCKEKVSAVQLSNIVYENIRGTSASEVAIKFDCSKSFPCKGIFLQDVILTAQSHGGTKTIATCENVRYVNRGKFFPSCSS* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2038 437 SUPERFAMILY Pectin lyase-like 63 436 IPR011050 -
Vra5g2038 437 SMART pbh1 329 350 IPR006626 -
Vra5g2038 437 SMART pbh1 270 290 IPR006626 -
Vra5g2038 437 SMART pbh1 300 321 IPR006626 -
Vra5g2038 437 SMART pbh1 247 268 IPR006626 -
Vra5g2038 437 SMART pbh1 220 246 IPR006626 -
Vra5g2038 437 Gene3D - 55 432 IPR012334 -
Vra5g2038 437 PANTHER POLYGALACTURONASE 10 436 - -
Vra5g2038 437 PANTHER - 10 436 - -
Vra5g2038 437 Pfam Glycosyl hydrolases family 28 101 424 IPR000743 GO:0004650|GO:0005975
Vra5g2038 437 ProSitePatterns Polygalacturonase active site. 277 290 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2038 Vra-Chr5 25988990 25992169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2038 4 436 Glycoside Hydrolase AT3G07970 53.691 7.33e-162 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2038 K01184 - gmx:100796446 745.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0143 2 1124859 1128560 Vra5g2038 5 25988990 25992169 PCT