Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0143 ATGTTTCCACAAACACCAACTATTTCACTTTTCATTGTCCTCTCTTCGTTAATCTTATGCAATGGCTATTACATAGAGGAGCCGCTTTACAAAACAAACTACAAACACTACCCTATGCATTATGGCAGATTCATCAAGAGAAAACATGAACATTTTGGTCTTATAACAAGGGCTAATAGAGTTGCCCCTCGTGGAACAGTTAGTGTTGATGATTTCGGAGCCAAGGCAGATGGAAGAGATAATTCCGAGGCATTTGGAAAGGCATGGAGTGAAGCATGTTCAAGAGGGTCTATCCTTGTGGTACCTGGAAATAGGATCTATCGTCTTAAGCCAACCACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGCTCTATGGCACAATCGAGGCATGGACTCAGATGTCGGCATACCAAGATAGACAACATTGGATTATGTTTGACAGTGTTTCAAATTTCAGAGTTGGTGGTGGTGGCACATTCGATGGCAAAGGAAAAAAGTGGTGGCAAAACTCCTGCAAAGCAACCACTAACCTTCCATGCAACGACCAACCAAGACCAAAGGCTGTGACTTTCTTCCAATGCAAAAATTTGGAAGTGAGAAACCTGATGTTCAAAGATGCACAGCAAATGCACTTAGTCTTTGATGGATGCTTCAATGTTATTGCTTCGAATCTGGTGATCAGAGCACCAGGGGACAGCCCCAATACTGATGGAATTCATGTCGCAGAGACACAAAATATTGTGATAAGCAATAGTCATATTGGGACAGGTGATGATTGTATTTCGATAATAAGTGGGTCACAAAACGTTCGAGCAACAGATATCACCTGCGGCCCTGGACATGGAATAAGCATTGGTAGCTTGGGAGCTGATAAATCAGAAGCTGAAGTGTCCAATGTGGTTGTGAACAGAGCAACTTTAACCGGAACCACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGCTCTGGTTATGCAAGAAACATCAAATTTTTGAACATAATGATGCAAAATGTGACAAATCCCATTATCATAGATCAATACTACTGTGATCAAACCAAGCCATGTCAAGAGCAGGACTCAGCTGTGCAATTAAGCAATGTTTTATACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCAGTCCCATGCAGCCAAATCTACCTGCAGGATGTGATTTTAGAGCCACAAGGCAGAGGTGGCACCATTGCAACATGTGAAAATGTTAGATATGTGAACAGAGGAAAGTTTTTTCCTCAATGCACTCCATGA 1305 0.4222 MFPQTPTISLFIVLSSLILCNGYYIEEPLYKTNYKHYPMHYGRFIKRKHEHFGLITRANRVAPRGTVSVDDFGAKADGRDNSEAFGKAWSEACSRGSILVVPGNRIYRLKPTTFSGPCRPNTAFMLYGTIEAWTQMSAYQDRQHWIMFDSVSNFRVGGGGTFDGKGKKWWQNSCKATTNLPCNDQPRPKAVTFFQCKNLEVRNLMFKDAQQMHLVFDGCFNVIASNLVIRAPGDSPNTDGIHVAETQNIVISNSHIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADKSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIMMQNVTNPIIIDQYYCDQTKPCQEQDSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCSQIYLQDVILEPQGRGGTIATCENVRYVNRGKFFPQCTP* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0143 434 SUPERFAMILY Pectin lyase-like 53 433 IPR011050 -
Vra2g0143 434 PANTHER - 6 433 - -
Vra2g0143 434 ProSitePatterns Polygalacturonase active site. 276 289 IPR000743 GO:0004650|GO:0005975
Vra2g0143 434 Pfam Glycosyl hydrolases family 28 99 421 IPR000743 GO:0004650|GO:0005975
Vra2g0143 434 Gene3D - 50 429 IPR012334 -
Vra2g0143 434 PANTHER POLYGALACTURONASE 6 433 - -
Vra2g0143 434 SMART pbh1 299 320 IPR006626 -
Vra2g0143 434 SMART pbh1 219 245 IPR006626 -
Vra2g0143 434 SMART pbh1 246 267 IPR006626 -
Vra2g0143 434 SMART pbh1 328 349 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0143 Vra-Chr2 1124859 1128560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0143 30 433 Glycoside Hydrolase AT3G07970 56.618 1.81e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0143 K01184 - gmx:732596 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0143 2 1124859 1128560 Vra5g2038 5 25988990 25992169 PCT