Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1708 ATGGCATATCAGCGGCGGCGCCAACACTATTACCAACGATTCCGTGTAGTGATCCCGGTGTTTTCCGCCGTCGCCGCCGCACTACTCTTTCTCTTCGCTCTCCTCTCGTTTTTAGCTCCTTCTCCCGTTGAAACCAATCGTATGCACTTGAAACGACAACACACTACGATTAGCTTTCGTGAGGATGCGGCGATTGAACATCCTGCGTTCCTTGTTCCGAGAGATGGAGGAAAGTTGGGACGGGATATCTGGACTTCTCGAAATTCAGAGCACTTCTACGGCTGTAGCAATTCCAGCAACAAGTTTCAAAAAGCTCAAGTGATTACACTTCCGAATCGATATTTGTTGATTGCGACAAGTGGAGGCTTGAATCAGCAAAGAACGGGGATTACAGATGCTGTTGTTGTTGCACGAATTTTGAATGCTACGCTTGTTGTTCCAAAACTGGATCAACGATCTTTCTGGAAAGATTCTAGTAACTTCTCAGAGATCTTTGATGTTGATTGGTTTATATCACATCTGTCCAAAGATGTCAAGATTATCAAGCAACTTCCCAGTAAGGGTAGGAAACCATTATCTGCATACAATATGCGGGTTCCAAGGAAGTGTAATGAAAGATGTTATATAACTCGCATATTACCTGTAATAATGAAAAAGCATGCTGTCCAGCTTAGCAAATTTGACTACAGGCTTGCAAACAGGTTGGATACAGAATATCAGAAGTTGAGATGTAGAGTTAACTACCATGCTTTAAAATTTACCAGCCCAATACTTGGAATGGGGGAAAAATTGGTCCATTGGATGAGGATGAGAAGTAAACATTATATTGCACTGCACCTAAGATTTGAACCTGATATGCTGGCATTTTCTGGATGTGATTATGGTGGAGGGGAGAAGGAGCAGAAAGAACTTGGCGCAATAAGGCGGAGGTGGAAGACATTACATAGAAGCAATCCTGATAGGGCAAGGAGGCAGGGAAGATGCCCATTAACCCCAGAAGAAGTTGGTCTCATGCTAAGAGCATTGGGATATGGTTCTGATGTTCATATTTACGTTGCATCAGGGGAAGTATATGGAGGGGAAAGAACACTAGCGCCTCTCAAGGAATTGTTTCCTAATTACCATTCAAAAGAGACCATTGCTACCAAGGAAGAATTACAATCATTTTCTTCATTTTCTTCTCGCATGGCTGCACTTGACTTCATTGTCTGTGATGAAAGTGATGTATTTGTAACCAATAATAATGGAAATATGGCAAAAATATTAGCTGGACGAAGGAGATACTTTGGGCATAAACCAACCATCCGTCCAAATGCTAAAAAACTCTACCGGTTGTTCTTGAATAGAAGAAACATGACTTGGGATGTTTTCGCGTCCAGTGTCCGTAATTTCCAGAGAGGCTTCATGGGGGAGCCAAAGGAGGTTAGACCAGGTAGAGGCGGATTTCATGAGAATCCATCGACCTGCATATGTGAAGATTCCACAGCCAAAGTTGAGAAAAATTCAGGATCTCGAAAACATGGAAAGGATAGTACAACGAAGAGAAATGCATCAAACGATGAACCGGATGTTGACAATGAGGCTGAATGGCCAGAAATGGATGATGATGATGATGATCAGAATGATCTAGCAGATAAGGGTACATTCAATGAAACATTTTCGGACTATGATGCTATGAACTTCGAGGATCCTGATTTAGAGGAAATTATATCAGATTAG 1719 0.4212 MAYQRRRQHYYQRFRVVIPVFSAVAAALLFLFALLSFLAPSPVETNRMHLKRQHTTISFREDAAIEHPAFLVPRDGGKLGRDIWTSRNSEHFYGCSNSSNKFQKAQVITLPNRYLLIATSGGLNQQRTGITDAVVVARILNATLVVPKLDQRSFWKDSSNFSEIFDVDWFISHLSKDVKIIKQLPSKGRKPLSAYNMRVPRKCNERCYITRILPVIMKKHAVQLSKFDYRLANRLDTEYQKLRCRVNYHALKFTSPILGMGEKLVHWMRMRSKHYIALHLRFEPDMLAFSGCDYGGGEKEQKELGAIRRRWKTLHRSNPDRARRQGRCPLTPEEVGLMLRALGYGSDVHIYVASGEVYGGERTLAPLKELFPNYHSKETIATKEELQSFSSFSSRMAALDFIVCDESDVFVTNNNGNMAKILAGRRRYFGHKPTIRPNAKKLYRLFLNRRNMTWDVFASSVRNFQRGFMGEPKEVRPGRGGFHENPSTCICEDSTAKVEKNSGSRKHGKDSTTKRNASNDEPDVDNEAEWPEMDDDDDDQNDLADKGTFNETFSDYDAMNFEDPDLEEIISD* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1708 572 MobiDBLite consensus disorder prediction 523 542 - -
Vra5g1708 572 CDD O-FucT_plant 114 434 IPR024709 -
Vra5g1708 572 MobiDBLite consensus disorder prediction 558 572 - -
Vra5g1708 572 PIRSF UCP009360 2 499 IPR024709 -
Vra5g1708 572 MobiDBLite consensus disorder prediction 495 572 - -
Vra5g1708 572 PANTHER O-FUCOSYLTRANSFERASE 16 6 572 - -
Vra5g1708 572 Pfam GDP-fucose protein O-fucosyltransferase 114 428 IPR019378 -
Vra5g1708 572 PANTHER O-FUCOSYLTRANSFERASE 16 6 572 - -
Vra5g1708 572 MobiDBLite consensus disorder prediction 498 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1708 Vra-Chr5 23362443 23368551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1708 114 445 Miscellaneous Gene Families AT1G22460 50.296 5.74e-98 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1708 - - gmx:100817698 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1708 5 23362443 23368551 Vra11g0873 11 7367415 7373142 ECH
Vra5g1708 5 23362443 23368551 Vra5g1708 5 23362443 23368551 ECH