Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1399 ATGAATGAAGACGAAGAAGAAGAAGAACACCAACATCCTTTCCCTTCGTTACAGTACGAAACGCTCTCAAAAAACCAGACACACAAAGCAAAGCCAAAAGGTCAAATCAAAAGAAAACTAACCGTTATGGCTTCAGAAGCACTGCTTCAGCTAGGTCTAACCCTAGAGGAATTCACCGAACTGGAGAGCACCATCAACACGCACCACAAGTTCGCGCCATCCCCCAAAATCTGCACCTCCATCATAGCGCAGCGTATCGAGGCTCCCGCGCACACGGTCTGGCCCCTCGTTCGAAGCTTCGACAACCCGCAGAAGTACAAGCACTTCATCAAGAGCTGCAACATGCGCTCCGGCGACGGCGGCGTCGGCAGCATCCGGGAGGTCACCGTCGTGTCCGGTCTCCCTGCCTCCACCAGCACCGAGCGCCTCGAGATTCTCGACGACGTCAACCACCTTCTCAGCTTCCGCGTGGTCGGCGGCGAGCACAGGCTCCACAACTACCGCTCCGTGACGTCGGTGAACGAGTTCAACAAGGACGGTAAGGTTTACACCGTTGTGTTGGAATCCTACGTTGTGGACATTCCCGAAGGGAACACCGGAGTGGATACCAAGATGTTTGTGGACACCGTCGTTAAGCTTAACCTTCAGAAACTTGGGGAGGTTGCCATGGCTACCATTCTGCACTGA 687 0.5415 MNEDEEEEEHQHPFPSLQYETLSKNQTHKAKPKGQIKRKLTVMASEALLQLGLTLEEFTELESTINTHHKFAPSPKICTSIIAQRIEAPAHTVWPLVRSFDNPQKYKHFIKSCNMRSGDGGVGSIREVTVVSGLPASTSTERLEILDDVNHLLSFRVVGGEHRLHNYRSVTSVNEFNKDGKVYTVVLESYVVDIPEGNTGVDTKMFVDTVVKLNLQKLGEVAMATILH* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1399 228 Gene3D - 39 227 IPR023393 -
Vra5g1399 228 Pfam Polyketide cyclase / dehydrase and lipid transport 84 220 IPR019587 -
Vra5g1399 228 PANTHER - 55 225 - -
Vra5g1399 228 SUPERFAMILY Bet v1-like 78 223 - -
Vra5g1399 228 MobiDBLite consensus disorder prediction 1 36 - -
Vra5g1399 228 CDD PYR_PYL_RCAR_like 78 222 - -
Vra5g1399 228 PANTHER ABSCISIC ACID RECEPTOR PYL2-LIKE 55 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1399 Vra-Chr5 20721131 20722425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1399 K14496 - gmx:100794619 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1399 5 20721131 20722425 Vra5g1399 5 20721131 20722425 ECH
Vra6g1748 6 33707762 33709402 Vra5g1399 5 20721131 20722425 PCT