Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1270 ATGAAGACTCGCACCTCTACCAAAATCTCTGCATCGTGGATTCCCATCTTCTCTGTCTTTTCCTTCATTCTTGGTATGCTCATCACAAGCAGGATGTGGGACCCACCTGAATCAAACGGGATGCTTATTGCGCAGCATCAGCAGGACCAACAGCTGCAAGTGATCTCAGGCGACTGCGCGACCAAGAAGATGCAGCCCAAGGATGCAGTGAGCGAGTTACAGAAGACCCATGAAGCCATCCAAGCTTTAGACAAACAAGTTTCCATGCTTCAGATGGAGCTAGCAGCAGCTAGGAGTTCTCGTGAAAATGGGATCTCTGATTCGAATACTTCAACCACCACTTCCGAGGAAGGTTCTGCAAGGAAGAAGGCATTTATAGTGATTGGCATAAACACGGCTTTCAGTAGCAGGAAGAGGCGTGATTCAGTAAGAGAGACTTGGATGCCTCAAGGTGAACAACTTCTTCAGTTGGAACGGGAGAAGGGAATTGTTATCAGGTTCATGATTGGCCACAGTGCAACTTCCAACAGCATACTAGATCGAGCTATTGATTCAGAAGAAGCTTTGCACAAAGACTTTCTTCGCCTAGAACATGTTGAAGGGTATCACGAGCTGTCTGCAAAAACAAAGATTTTCTTTTCTACCGCAGTTGCAAAATGGGATGCTGATTTCTATGTCAAGGTTGATGATGATGTCCATGTTAATTTAGGTGTCCTGGCAACAACCCTTGCTCGTCACCGATCAAAACCCAGGGTCTACATTGGGTGTATGAAATCAGGGCCTGTCCTTTCCAGAAAGGATGTCAAATACCATGAACCTGAGTTTTGGAAGTTTGGAGAAGAGGGGAACAAATACTTTCGACATGCAACTGGGCAGATATATGCAATCTCTAAAGATCTGGCCACATACATTTCCATCAACCAGCCTATTTTGCATAAGTATGCCAATGAAGATGTCTCGCTTGGTGCATGGTTCATTGGTCTTGAAGTTGAGCATATTGATGACCGCAGTATGTGCTGTGGAACTCCTCCAGACTGTGAGTGGAAGGCACAAGCAGGTAACATATGTGTTGCCTCATTTGATTGGAGCTGCAGTGGAATCTGCAAGTCAGTGGAGAAGATTAAATATGTCCACTCAAAGTGTGGAGAGGGGGATGGAGGTTTGGAGTGCTTTATTTTAGATACTTTCAAAGGAAAATGGTTTTTTGGTGGTTTGGAGAGAGACTAA 1227 0.4499 MKTRTSTKISASWIPIFSVFSFILGMLITSRMWDPPESNGMLIAQHQQDQQLQVISGDCATKKMQPKDAVSELQKTHEAIQALDKQVSMLQMELAAARSSRENGISDSNTSTTTSEEGSARKKAFIVIGINTAFSSRKRRDSVRETWMPQGEQLLQLEREKGIVIRFMIGHSATSNSILDRAIDSEEALHKDFLRLEHVEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGVLATTLARHRSKPRVYIGCMKSGPVLSRKDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKYANEDVSLGAWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKYVHSKCGEGDGGLECFILDTFKGKWFFGGLERD* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1270 408 Gene3D - 113 339 - -
Vra5g1270 408 Pfam Domain of unknown function (DUF4094) 10 100 IPR025298 -
Vra5g1270 408 Pfam Galactosyltransferase 138 335 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vra5g1270 408 PANTHER HEXOSYLTRANSFERASE 8 385 - -
Vra5g1270 408 MobiDBLite consensus disorder prediction 101 118 - -
Vra5g1270 408 MobiDBLite consensus disorder prediction 98 118 - -
Vra5g1270 408 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 385 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vra5g1270 408 Coils Coil 73 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1270 Vra-Chr5 19524598 19529000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1270 1 388 Glycosyltransferase AT1G77810 71.429 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1270 K20855 - gmx:100776715 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1370 6 26895768 26899302 Vra5g1270 5 19524598 19529000 PCT