Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1232 ATGCTAAGTTACAGGCCACTGCATTTTTGTTTTCTGCTCACAGTTTTCTTGTCCAGTCCCTTTCTGTTGTCGCACCAAGCTTCAGGGCTAGAAAATGAGGGAAAGGATGTTGTAGGCTTTTCTAGGTTGTATGTGTACGATGCTGCACCGTTCGAGAACTCGCCCGTTCCCTTAGCTGCTGAGAGAACACGAAGAAAAGACCCTCTTAATAGCTTCAACAAGTACATATATGGATGGAATATCACTGACAACCATTATTGGGCTTCTGTGGCATATACTGCAGTTCCTATGTTCAGTATTGCAGCAGTTTGGTTCTTGGGGTTTGGCTTGTGCTTATTCACTATTGGTGTTTGTTACTTCTGTCGTAAAAGAGAACCTTATGGTTATTCACCAACATGCTATGCCCTTTCCCTTATTCTCCTGATGTTATTCACATTTACAGCAGTGATTGGATGTGCAGTTCTCTACATCGGCCAAGGAAGCTTCCATCACAGCATGTCGTCCACATTGCAGTACGTGGTACATCAAGCTGATTCCACTGTGGATAAGCTTAGGAACGTGTCAGATTATCTTAATCAGGCTAAACAGGTTGGAATCGATCGAATTTTTCTCCCGACAAATGTTCAAACTGACATTGATGCGGCAGAAACAGATATCAATAACTCTGCTGGCACCCTTGCTGACAAGACAAAGGAGAACTCAGACAACATACAAGATCTCTTAGATTCTGCGAGGTTGGCGCTGATCATAATAGCTGCTGTTATGTTAGTCTTGACATTTCTTGGATTTTTATTCTCAATTTTTGGCATACAGCTCCTTGTGTATATCTTGGTAATGGCAGGATGGGTTCTTGTTACTGGTGCCCTTATATTATGTGGTTTGTTCCTTGTTCTCCATAATGCAACAGCAGACAGTTGTGTAGCTGTGAATGAATGGATCCAGTATCCCATTGCACACACGGCAATGGACGATATTCTGCCCTGTGTGGACAATGCTACTGCACAAGAAACAATTTTGCGAAGCAAAGAAGTAACTTCTGAACTAGTGAATTTGGTGAACCAGGTTATCACCAACGCCTCCAACATAAATTTCGCTCCCAATTTCACTCCACTCTACTATAATCAATCTGGTCCCCTCATGCCGCTCCTCTGCAATCCCTTCCATCCTGACATGACTGATAGACAATGTGATCCTGGTGAAGTGACCCTGAGCAATGCAACACAGGTGTATGGCAGTTTCGTGTGCCAGGTTTCACCATCTGAGATATGCATGACGCAGGGGCGTTTGACCCCCACCTTCTACAACCAAGTCTCCGCTGGAATAAATGTGGCCAACGCTTTGTATAATGATGCCCCCTCCCTGGTTGAGCTACAAGATTGCACCTTCGTTCGGGAAACTCTAAGCGTTATATCTACAGACCATTGTCCTGGTCTACGGCGTTACAGTAGATGGATCTATGTTGGATTGGTAATGGTCTCTTTTGCTGTCATGTTCTCTTTGATCTTCTGGATCGTGTATGGAAGAGAGCGTAGACATCGTCTGCATAGAAAAGAGTTAAAGAACTTGACTCCAACACGTGCACCACCACCAGGACAAGCACTAGCATTGGCCCAAATCCCTGAAGGAGACAAGTATAATTAG 1641 0.4418 MLSYRPLHFCFLLTVFLSSPFLLSHQASGLENEGKDVVGFSRLYVYDAAPFENSPVPLAAERTRRKDPLNSFNKYIYGWNITDNHYWASVAYTAVPMFSIAAVWFLGFGLCLFTIGVCYFCRKREPYGYSPTCYALSLILLMLFTFTAVIGCAVLYIGQGSFHHSMSSTLQYVVHQADSTVDKLRNVSDYLNQAKQVGIDRIFLPTNVQTDIDAAETDINNSAGTLADKTKENSDNIQDLLDSARLALIIIAAVMLVLTFLGFLFSIFGIQLLVYILVMAGWVLVTGALILCGLFLVLHNATADSCVAVNEWIQYPIAHTAMDDILPCVDNATAQETILRSKEVTSELVNLVNQVITNASNINFAPNFTPLYYNQSGPLMPLLCNPFHPDMTDRQCDPGEVTLSNATQVYGSFVCQVSPSEICMTQGRLTPTFYNQVSAGINVANALYNDAPSLVELQDCTFVRETLSVISTDHCPGLRRYSRWIYVGLVMVSFAVMFSLIFWIVYGRERRHRLHRKELKNLTPTRAPPPGQALALAQIPEGDKYN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1232 546 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 40 519 IPR040283 -
Vra5g1232 546 PANTHER TRANSMEMBRANE PROTEIN 40 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1232 Vra-Chr5 18694583 18698754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1232 - - gmx:100798323 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1232 5 18694583 18698754 Vra5g1232 5 18694583 18698754 ECH
Vra7g2330 7 43373152 43376360 Vra5g1232 5 18694583 18698754 ECH