LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g1124	ATGGCGAATGATAAAGTTATTGATGAAGGTGAGAAGAACGAGAGCGGTGGTACGAATTCCTCCGAAGGTGGGACGAAGAAACGAAAAGGACTTTTGTCGCGAATTTGGAATGGGATACTTAGGTTACATGGTGATGATTTTGAGAAGAGACTCCAATACATTTCTAAAGAGGAGGCTCAGGTTATGACTAGGATGAACAGGAGATCACGATCCTGGAGGAGAATTTCCCGCCATCTTATTGTGTTTTCTGTCATATTTGAGGTTGTTGCTATAGTTTATGCTATTATGACAACAAGATCAATTCATATGAATTGGAAAATGAGAGCACTCCGGGTTTTGCCAATGTTTCTTTTGCCTGCACTGTCATCGGCTGCCTATGCAGCATTTGTAAGCTTCACAAGGATTTGTGATCGTAGGGACCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGACAAGAAAAAATTGATGAGCTCAAAGAAAAGACAAATTATTACACTACACAACAGCTCATTCAGAGATATGATCCAGACCCAGCTGCAAAAGCAGCTGCTGCGACTGTTTTAGCGTCTAAGTTGGGTGCAGATTCTGGTTTGAGAGTGTATCTGGAAGATCAACTCAATTCTGATGCTTCAATAGGGAAGAGCAATGATGTTGAACTTATGCAGTCCTCTGGGATTCGAAATCGGAGACAAGTTCAATCTAGATCCACTAGTCCAAGATCAGCCACACTAAATTCTGGTGATCAACAAGTTGGTCTTGGGGGAAGTTATCAAACCCAGACTTTTGACGACAATCAGCCTGTTGTTGTTGAACATCACCAACCTCAGACTTCAAACACACAAGATGGTGGATGGATTGCACGAATTGCAGCTTTGCTTGTGGGTGAAGATCCAACACAGTCTTATGCTCTCATATGTGGTAACTGCTATATGCATAATGGTCTAGCTCGGAGGGAGGATTTCCCATTTATCACATACTACTGCCCACACTGTCGAGCACTAAACAAACCGAAACAATTGGATGAACGTAATTCTAGTCTTACTTCTCCAAATACAGGGACTCCAAAAACAGACAATAGTTCCACTGATGCAGTTAAGAATATTAGACCTTCTACAGCTGAGAGTATAATAGCAGGTAGTAGTCCTGGAAGTGCTTCTAGCTCTGAGATTGGGGAAGTAACAGAAAGAGCAAGTGTGGATGAGAAAGTTGATTAA	1215	0.4181	MANDKVIDEGEKNESGGTNSSEGGTKKRKGLLSRIWNGILRLHGDDFEKRLQYISKEEAQVMTRMNRRSRSWRRISRHLIVFSVIFEVVAIVYAIMTTRSIHMNWKMRALRVLPMFLLPALSSAAYAAFVSFTRICDRRDQKILERLRAERQEKIDELKEKTNYYTTQQLIQRYDPDPAAKAAAATVLASKLGADSGLRVYLEDQLNSDASIGKSNDVELMQSSGIRNRRQVQSRSTSPRSATLNSGDQQVGLGGSYQTQTFDDNQPVVVEHHQPQTSNTQDGGWIARIAALLVGEDPTQSYALICGNCYMHNGLARREDFPFITYYCPHCRALNKPKQLDERNSSLTSPNTGTPKTDNSSTDAVKNIRPSTAESIIAGSSPGSASSSEIGEVTERASVDEKVD*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g1124	404	MobiDBLite	consensus disorder prediction	222	256	-	-
	Vra5g1124	404	PANTHER	INTEGRAL MEMBRANE METAL-BINDING FAMILY PROTEIN (DUF2296)	15	400	-	-
	Vra5g1124	404	Pfam	Predicted integral membrane zinc-ribbon metal-binding protein	285	335	IPR019273	-
	Vra5g1124	404	Coils	Coil	141	164	-	-
	Vra5g1124	404	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vra5g1124	404	MobiDBLite	consensus disorder prediction	341	404	-	-
	Vra5g1124	404	MobiDBLite	consensus disorder prediction	341	393	-	-
	Vra5g1124	404	PANTHER	ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK	15	400	IPR040115	GO:0071786

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g1124	Vra-Chr5	17694551	17698507	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g1124	K23292		-	gmx:100797087	573.933

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra6g1508	6	29933001	29937750	Vra5g1124	5	17694551	17698507	PCT