Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0503 ATGGCTTCTCAATCCCCGTCTCTTCCCATTTCCACAGTTCAAACCGCTGGTGGTGAAATTGTTCAACCGGAAAATGTTGATCGGCAGAATAGTGGAGAGGAGCTTGGTAAACAAAGTTCAGACACATCTGTGTTTGTTAACTCAGAACCAATGCGCGAGGACCAAATTCAGAATGCTGTGAAATTTCTGTCGCACCCGAAAGTTAGAGGTTCTCCTGTCATCCATAGGCGGTCATTTCTGGAGAAGAAGGGCCTTACGAAGGAGGAGATTGACGAAGCCTTTAGGCGTGTGCCTGATTCAGCTCCCAGTGTGCAGACATCTGGTGTAATTCAAGATGAACAATTAAAATCATCTTCAAACATTCATCAGCAAAGCCAACCACAGGCTTTGCAGACGACTGTACCAGCTTCTACTGGTGTTATTGCTTCACTGGGAACCTTGTCAGGCCGCCGTTTTCACTGGTCTCATGCCCTTATTGCAGTTGGATTACTAGCTACTTCTGGTGCTGGTACAGTTATACTAATTAAGAATTCTGTTCTTCCTTGGTTAAAAACCTGGTTGCGCAATGTTGTGCTAGAAGGGGAAAATGACCAATTAAAGAGAACAGGCTCAAAACCAACTTTGGCAGAAGAAGCTGCACAGGCAGCAAAAGCAGCTGCAGTTGCAGCCGCTGATTTGGCAAAAGCTAGCCAAGAATTATTGACTTCTAAAATTGAAGAGAAAAGATATTTTGTACAAGTTGTGAGCCTTTTGGATAGGCAAGTGGAGGAAATGAAATTGATGATCAATGCAGTAAAAAGATTGGAAGCCTCTGGTGGACTCTCTGTCTCCAAGCAAGAAGATCGCCAAGTCACTCAAACAAGTTCAAAGATACAGCAGCCTGTCCTTTATGGGAAGTCAGACTACGAGTCCCAATCAGTGAGATCTTCGTACTCTCCTGTATCTCTTCAACCATCTAGTGCTCCGCATCCAAAATCATATTTGGAGATAATGGCCATGATTCAAAGAGGAGAGAAGCCTTCTAATATTAGAGAAATTGATGATTCACCCCCCAACCCTTATCAGCAACCATCAAACCCTCGCTTAGCCCCTAAAGCGAAGCCTTGGGAGGTTAGTCAGGTGCAAAACACCTCAACCCAAGTCGTCCGGTATCAAGCAAATGGCAAGGTCCAAGATAGTGGTGGTGACAACTCAGTACCCTGGTGGCAAACGAAGGACATCAGAATCAAAGAGATTGATAACGAAGTTGAATATAATGTAGCATCTGCTGCATCCAGTCAGCAGCCAGTCCAACGATTGTGGGTTCCTCCTCAACCTCCCCCTATAGCAATGCCGGAGGCTGCGGAAGCAATCAGACGCCCAAAATCAGTCGTCCAGAAGGAAGCAATTCAGGATGATCAGTCAGCCCCAAATTCTTCAGAGTTCTCTAATGGATCCAATTCCGAAGAGGCTATAGAAGGCAACGGCATCGACTCACTTATCAGCTCTGGTGAGATCCAAAATCATGAACTCAATTACGAAGAAAAATAA 1530 0.4503 MASQSPSLPISTVQTAGGEIVQPENVDRQNSGEELGKQSSDTSVFVNSEPMREDQIQNAVKFLSHPKVRGSPVIHRRSFLEKKGLTKEEIDEAFRRVPDSAPSVQTSGVIQDEQLKSSSNIHQQSQPQALQTTVPASTGVIASLGTLSGRRFHWSHALIAVGLLATSGAGTVILIKNSVLPWLKTWLRNVVLEGENDQLKRTGSKPTLAEEAAQAAKAAAVAAADLAKASQELLTSKIEEKRYFVQVVSLLDRQVEEMKLMINAVKRLEASGGLSVSKQEDRQVTQTSSKIQQPVLYGKSDYESQSVRSSYSPVSLQPSSAPHPKSYLEIMAMIQRGEKPSNIREIDDSPPNPYQQPSNPRLAPKAKPWEVSQVQNTSTQVVRYQANGKVQDSGGDNSVPWWQTKDIRIKEIDNEVEYNVASAASSQQPVQRLWVPPQPPPIAMPEAAEAIRRPKSVVQKEAIQDDQSAPNSSEFSNGSNSEEAIEGNGIDSLISSGEIQNHELNYEEK* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0503 509 MobiDBLite consensus disorder prediction 342 367 - -
Vra5g0503 509 MobiDBLite consensus disorder prediction 461 486 - -
Vra5g0503 509 Pfam Family of unknown function (DUF5572) 322 371 - -
Vra5g0503 509 MobiDBLite consensus disorder prediction 276 299 - -
Vra5g0503 509 MobiDBLite consensus disorder prediction 273 299 - -
Vra5g0503 509 Coils Coil 251 271 - -
Vra5g0503 509 MobiDBLite consensus disorder prediction 1 43 - -
Vra5g0503 509 Gene3D - 44 107 IPR036388 -
Vra5g0503 509 MobiDBLite consensus disorder prediction 454 509 - -
Vra5g0503 509 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14-LIKE 19 478 - -
Vra5g0503 509 Pfam Pex14 N-terminal domain 52 96 IPR006785 -
Vra5g0503 509 PANTHER PEROXISOMAL MEMBRANE PROTEIN PEX14 19 478 IPR025655 GO:0005515|GO:0005778|GO:0016560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0503 Vra-Chr5 5896308 5903785 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0503 K13343 - gmx:100807229 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1637 7 34833982 34842670 Vra5g0503 5 5896308 5903785 PCT