Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0396 ATGGAATATTTTGCGCAATTTGGGTTGTGGGTGACCTTGATCTTGTTCTTGACATTTCAAATTCAACCCAATTATGGGTTCTACCTTCCTGGTAGTTATCCCCACAAGTATGTTGTCACGGATGAGTTGTGGGTGAAAGTGAATTCGCTTACTTCCATTGACACAGAGATGCCCTTTAGCTATTACAGTTTGCCCTTTTGCAAGCCTGAGGGAGGTATCAAGGACAGTGCTGAGAATCTTGGGGAACTCCTCATGGGTGACAGAATAGAGAACTCTCCCTACAGGTTTAAGATGTACACAAATGAATCTGAGATTTACTTGTGCCGGGTGGAGTCATTGTCCGGGGATCAGTTCAAGATCTTGAAGGAGAGGATTGACCAGATGTATCAGGTTAACTTGATTCTTGATAATTTACCTGCTATCAGGTTCACACAGAAAGAAGGGTACTTCATGAGATGGACGGGGTACCCTGTTGGTGTTAAGATCGATGATGCTTATTATGTGTTTAACCATCTCAAGTTCAATGTTCTTGTTCACAAGTATGAGGAGACCAATGTGGCTCGAGTAATGGGGACCGGCGATGGCGCAGAAATGATCCCTGTTGGCAAGGAGGACTCTTCTGAGAAGCCTGGATACATGGTTGTGGGGTTCGAGGTGATTCCTTGCAGTATTATGCATAATGCTGATATGGCTAAAAACTTGAAGATGTATGACAAGTATCCCTCGTCTATCCGATGCGATCCGGCCACCGTGGCAATGCCTATCAAAGAGGGTCAGCCTCTTGTTTTCAGTTACGAGGTGACATTTGAGGAGAGTGACATCAAGTGGCCATCTAGATGGGATGCCTACTTAAAGATGGAGGGAGCTAAAGTGCATTGGTTCTCTATCCTCAATTCGCTTATGGTGATCACTTTTCTTGCTGGTATTGTTCTTGTGATCTTCCTGAGAACTGTTAGGAGAGATCTGACCCGTTATGAGGAGCTGGACAAGGAGGCTCAAGCACAGATGAATGAAGAGTTATCTGGTTGGAAGCTTGTGGTGGGAGATGTTTTCCGTGCTCCATCGAATCCTGCTTTGTTGTGTGTGATGGTTGGGGATGGGGTTCAGATTCTTGGTATGTCTGTTGTGACAATTTTGTTTGCTGCACTGGGATTCATGTCACCAGCATCTCGCGGAACACTGATCACAGGTATGCTGTTTTTCTACATGATACTTGGTATTGCTGCTGGCTATGTCTCAGTTCGGTTGTGGAGGACAATTGCCTTTGGAGACCAGAAGGGCTGGGTTTCCATCGCATGGAAGGCCGCTTGTTTCTTCCCAGGAATTTCCTTCTTGATCCTCACAACCTTGAACTTCCTTTTGTGGGGAAGCCACAGCACTGGAGCCATTCCATTTTCACTCTTTGTGATACTAATCTTGCTTTGGTTCTGCATATCTGTACCCCTTACCCTTGTTGGTGGCTACTTCGGAGCCAAGGCACCCCACATTGAGTATCCAGTCCGAACCAACCAAATTCCTCGTGAAGTTCCCCAGCAAAAGTACCCATCATGGCTGTTAGTTCTTGGTGCTGGCACCCTTCCATTTGGCACCTTGTTCATTGAGCTCTTTTTTATCATGTCTAGCATTTGGATGGGTCGAGTTTACTATGTCTTCGGGTTCCTCTTCGTTGTTCTGATCCTTCTTGTGCTGGTTTGTGCTGAGGTATCTTTAGTTCTTACTTACATGCACCTGTGTGTGGAGGATTGGAAATGGTGGTGGAAATCGTTCTTTGCCTCCGGTTCTGTTGCCTTGTACATCTTTCTGTACTCCATTAACTATCTTGTGTTTGATCTCAAGAGTTTGAGTGGTCCTGTGTCTGCAACTCTGTACTTGGGATACTCACTCTTCATGGTTCTAGCAATCATGCTCTCTACAGGGACTATTGGGTTCCTCTCTTCATTCTGGTTCGTGCATTACTTGTTCTCTTCAGTCAAGTTGGATTGA 1983 0.4544 MEYFAQFGLWVTLILFLTFQIQPNYGFYLPGSYPHKYVVTDELWVKVNSLTSIDTEMPFSYYSLPFCKPEGGIKDSAENLGELLMGDRIENSPYRFKMYTNESEIYLCRVESLSGDQFKILKERIDQMYQVNLILDNLPAIRFTQKEGYFMRWTGYPVGVKIDDAYYVFNHLKFNVLVHKYEETNVARVMGTGDGAEMIPVGKEDSSEKPGYMVVGFEVIPCSIMHNADMAKNLKMYDKYPSSIRCDPATVAMPIKEGQPLVFSYEVTFEESDIKWPSRWDAYLKMEGAKVHWFSILNSLMVITFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPSNPALLCVMVGDGVQILGMSVVTILFAALGFMSPASRGTLITGMLFFYMILGIAAGYVSVRLWRTIAFGDQKGWVSIAWKAACFFPGISFLILTTLNFLLWGSHSTGAIPFSLFVILILLWFCISVPLTLVGGYFGAKAPHIEYPVRTNQIPREVPQQKYPSWLLVLGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLFVVLILLVLVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVALYIFLYSINYLVFDLKSLSGPVSATLYLGYSLFMVLAIMLSTGTIGFLSSFWFVHYLFSSVKLD* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0396 660 Pfam Endomembrane protein 70 58 613 IPR004240 GO:0016021
Vra5g0396 660 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 22 660 IPR004240 GO:0016021
Vra5g0396 660 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 22 660 - -
Vra5g0396 660 Coils Coil 315 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0396 Vra-Chr5 4115432 4118193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0396 1 660 Miscellaneous Gene Families AT5G35160 83.988 0.0 1129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0396 K17086 - gmx:100819368 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2345 7 43550547 43553141 Vra5g0396 5 4115432 4118193 PCT