Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0346 ATGGTTAAGATGAAAGAGGAAAAAGAGAGGAAAATTGTACTCACAAAGCCATTAACAATAGACAGTGAATCTAATTCAGACGCGTATAAAGCCCCTAATCTTATGCAACGAATGCTCAGTTTATTCAAGAATGTACGCCCCGGTTCTGACCTCACACGCTTTCAGCTGCCACCACTATTCAACTTACCGAAGTCACAACTTCAGTGCTATGGTGAATCTGTGTATTGCACAGGTTCAGACTTGCTAAGTATGTGCAACAATGGAGAGAGTCCGATTGACAGGTTCATATCTGTTGTAGCATGGACCATATCTACCACTCGCCCTGTGACTTTTGGGGTTGCGCCTTATAATCCAATTCTTGGTGAGACACACCATGTTTCAAAGGGAAACCTTAATGTGTTATTGGAGCAGATTTCACATCACCCTCCAGTAGCTGCTCTCCATGCAACTGATGAGAAGGAAAACATTGAAATGATATGGTGCCAGCGACCTGATCCAAAGTTTAATGGCACATCAGTTGAAGCTAAAGTGCATGGTATTCGGCAGCTGAAGCTTCTCAATCATGGTGAAACATATGAAACGAATTGCCCTCACCTTTTACTTAGAATTTTTCCAGTTACTTCGGCTGATTGGTGTGGCACAGTTACCATCCGGTGCCAAGAGACAGGCATAGTGGCTGAGTTATCCTACAGATCAAATAGTTCCTTTCTAGGAATTGGAGGGAATCATAGAGTGATCAAAGGAAAGATCCTTGACTCTTCATCATTAAAAGTTTTGTATGAAGTTGATGGTCATTGGGATAGGGTTGTAAAATTGAAGGATACAAATAATAAGGAAGTAAGAGTAATATATGATGCAAAGGAAGTTCTGTCATGTCTGGAAACTCCAAAACTCAAGGATTCGGAGAGTGTGTGGCCAACTGAATCAGCTCATGTTTGGGGAGAACTGAGTGAAGCCATATTGAGGAAGGACTGGGAGAAAGCAAGAGAAGCAAAGCAAGAAATTGAGGAAAGACAAAGGAAGCTCTTGAAAGAAAGAGAGTCAAAAGGAGAAACATGGGTTTCTAAGCATTTTGTAGTATCTAACAACAAAGAAGGGTGGGAATGTTCACCTATTCAAAACACTGTACCAGCTGCCCCCATCACAGCACAATAA 1155 0.4165 MVKMKEEKERKIVLTKPLTIDSESNSDAYKAPNLMQRMLSLFKNVRPGSDLTRFQLPPLFNLPKSQLQCYGESVYCTGSDLLSMCNNGESPIDRFISVVAWTISTTRPVTFGVAPYNPILGETHHVSKGNLNVLLEQISHHPPVAALHATDEKENIEMIWCQRPDPKFNGTSVEAKVHGIRQLKLLNHGETYETNCPHLLLRIFPVTSADWCGTVTIRCQETGIVAELSYRSNSSFLGIGGNHRVIKGKILDSSSLKVLYEVDGHWDRVVKLKDTNNKEVRVIYDAKEVLSCLETPKLKDSESVWPTESAHVWGELSEAILRKDWEKAREAKQEIEERQRKLLKERESKGETWVSKHFVVSNNKEGWECSPIQNTVPAAPITAQ* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0346 384 SUPERFAMILY Oxysterol-binding protein-like 37 370 IPR037239 -
Vra5g0346 384 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 4 382 IPR000648 GO:0008289
Vra5g0346 384 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 4C 4 382 - -
Vra5g0346 384 ProSitePatterns Oxysterol-binding protein family signature. 136 146 IPR018494 -
Vra5g0346 384 Gene3D - 120 295 - -
Vra5g0346 384 Pfam Oxysterol-binding protein 41 313 IPR000648 GO:0008289
Vra5g0346 384 Coils Coil 325 348 - -
Vra5g0346 384 Gene3D - 305 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0346 Vra-Chr5 3424199 3429154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0346 K22285 - gmx:100813724 671.389
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0346 5 3424199 3429154 Vra5g0346 5 3424199 3429154 ECH
Vra7g2521 7 45517430 45521294 Vra5g0346 5 3424199 3429154 PCT