Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0342 ATGGTTGATCAGGATTTATCACGACTATACCCAGAACATGGCAGTTATTTTCAAGCACCAGGATGCCAAAGCATGTTGAGACGAATTTTGTTGCTGTGGTGTCTCAGGCATCCAGAATATGGATATAGACAAGGAATGCATGAGTTACTTGCTCCTCTGCTTTATGTACTGCAATCTGATTTGGAGCGCCTCTCAGAAGTTCGGAAGCTTTATGAAGATCACTTTACAGATAGATTTGATGACCTTTTAGGTCAAGAGAATGATCTTTCTTACAGCTTTGAATTTAGAAAGTCTCGAGAATTGATGAGTGATGGATTTGATTCCCATGGAAAATCCATTAAAGTCAATAGTCTTGATGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCATACTGTATGTTTGAGGCTTTAATGAACGGGGCTCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCCTCACCTATATCCGGGTCCCATAGTGGCCTTCCTCCTGTGATTGAAGCTTCTACGGCATTGTATTATTTGTTGTCTCAGGTAGATTCATCTCTTCATAGCCATCTTTTTGATCTTGGAGTTGAACCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGTCGGGAGTTTTCACTTGGCAACCTTTTGATCATCTGGGATGAGATATTTGCATCCGAGAATAACAGCAATGGAAAAGGTTCTGATGACTGTGAGTTCAGAATCTTAAGTTCACCCCGTGGAGCATTTATCTCAGCTATGGCAGTGGCAATGTTATTGCATTTAAGATCTTCACTGCTTGCAACTGAAAACCCTACAAGGTGTCTCCAGAGATTATTAAACTTCCCTGAAGACATTAATATCCAAAAACTACTAGAGAAGGCCAGATCCTTGCAGGCTCTTGCTCTAAGTGTTGATATTTCAACCTCGTCACTTTTGTATATCGGGTTCCATTACCAAAGTAAATCGAAGTATAGTAGATCTGTGACCCTTCCATCTGAATCTCTGTCTCCGAAAACTCCCCTGAGTTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGCCCAGAAGGCTGAAGAACAAAGGCAAGATGGTCGAGAAAAACAGGTTCCAACTCGGAAAAAGGGATGGACAGAAAAAGTAAAATTCAGTTTGAGAAGAGCAGAATCTGACCCTCCTAGGTCAAGATTGAGTGGCAAAAATTTTAGGCGCAATTTGTTGCAAGATCTGCGCAAGGCACTTGGCTCAGATGATGATGCAGAGAAAATGCAGCCAGATGAAACCATATGCCAGAATGAGAATCCTTCTGAAGCAATTCAAGTACAAGAAGACGGTAGCTTCAATGGTGACAACAATTATTCATCTGATGATAGATCTCCAGGTGTACCTTTTGGCAGTGAGGAAGACTTGTCTATATATTCTGACCCAACTAGCCCCCCCAATGAGGCCAATGATCATGAAATAATCTCAGGGGAAATTAGTGTTGCATCTAATTCATCCCTGTTCGAACGCAATGAAACATCAGGTATTAGTTCGCCATTGCCAATGCCCTATCCTCCTGAGGACATTTATCAGACATCGTTCTGCAATACAGGAAATTCTGAATGCAATGAAACTTCAGATACCAGTCCCAATGATCAATCCCGTCCAATCTCTGATCTTCCTGAGAACATTTCTCAGAGATCAATCTGCAATACACGAAATTCTGAACGCAATGATTCACCCCTTCCCATCTCTTATTCTCCTGACAACATTTTCTGGAATACAGGAAATTCTGAATGCAATGAAACTTTAGATACCAGTCCCAATGATCCATCCCTAACGTCAGGGTGCAATAACAATAATGCTGAAAATAAAGCCACACCTCCTAAAGAGAAAAAGCATAATAAGTTCCAGTGGCTTTGGCCCTTTGGACGGAATACTGTTGAGGCTATATCTGAGAAAGCTGGTGGTAGCTCTCAAAACAGTGCTCCACAAGCCACCTCATCCACAACTAATGACCATGGTGGTTCTGTTAGCTCCAGAGGAGAATCGGTCGACCAGAATGTTATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTTGACCATATTCAGGTAATTGAATCTGTCTTCCAACAAGACCGCAAAGGCCAGGTTACTGCCATGACAGCTCTCAAAGAGCTTCGGAAAATTAGCAATCTTTTGTCAGAGATGTAG 2277 0.4177 MVDQDLSRLYPEHGSYFQAPGCQSMLRRILLLWCLRHPEYGYRQGMHELLAPLLYVLQSDLERLSEVRKLYEDHFTDRFDDLLGQENDLSYSFEFRKSRELMSDGFDSHGKSIKVNSLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFEALMNGAHGSVAMADFFSSSPISGSHSGLPPVIEASTALYYLLSQVDSSLHSHLFDLGVEPQYFSLRWLRVLFGREFSLGNLLIIWDEIFASENNSNGKGSDDCEFRILSSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIQKLLEKARSLQALALSVDISTSSLLYIGFHYQSKSKYSRSVTLPSESLSPKTPLSLVPDSYWEEKWRVAQKAEEQRQDGREKQVPTRKKGWTEKVKFSLRRAESDPPRSRLSGKNFRRNLLQDLRKALGSDDDAEKMQPDETICQNENPSEAIQVQEDGSFNGDNNYSSDDRSPGVPFGSEEDLSIYSDPTSPPNEANDHEIISGEISVASNSSLFERNETSGISSPLPMPYPPEDIYQTSFCNTGNSECNETSDTSPNDQSRPISDLPENISQRSICNTRNSERNDSPLPISYSPDNIFWNTGNSECNETLDTSPNDPSLTSGCNNNNAENKATPPKEKKHNKFQWLWPFGRNTVEAISEKAGGSSQNSAPQATSSTTNDHGGSVSSRGESVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNLLSEM* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0342 758 MobiDBLite consensus disorder prediction 550 605 - -
Vra5g0342 758 Pfam Rab-GTPase-TBC domain 149 251 IPR000195 -
Vra5g0342 758 Pfam Rab-GTPase-TBC domain 2 63 IPR000195 -
Vra5g0342 758 ProSiteProfiles TBC/rab GAP domain profile. 1 251 IPR000195 -
Vra5g0342 758 MobiDBLite consensus disorder prediction 530 605 - -
Vra5g0342 758 SMART tbc_4 1 294 IPR000195 -
Vra5g0342 758 MobiDBLite consensus disorder prediction 617 656 - -
Vra5g0342 758 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 2 211 IPR035969 -
Vra5g0342 758 MobiDBLite consensus disorder prediction 673 707 - -
Vra5g0342 758 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 627 681 - -
Vra5g0342 758 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 421 - -
Vra5g0342 758 MobiDBLite consensus disorder prediction 441 511 - -
Vra5g0342 758 MobiDBLite consensus disorder prediction 407 424 - -
Vra5g0342 758 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 1 168 - -
Vra5g0342 758 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 421 - -
Vra5g0342 758 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 627 681 - -
Vra5g0342 758 MobiDBLite consensus disorder prediction 617 645 - -
Vra5g0342 758 Gene3D - 190 329 - -
Vra5g0342 758 MobiDBLite consensus disorder prediction 453 485 - -
Vra5g0342 758 MobiDBLite consensus disorder prediction 407 428 - -
Vra5g0342 758 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 187 323 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0342 Vra-Chr5 3363194 3368211 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0342 K18469 - gmx:100782008 1172.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0342 5 3363194 3368211 Vra5g0342 5 3363194 3368211 ECH
Vra7g2524 7 45546399 45552452 Vra5g0342 5 3363194 3368211 PCT