Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0339 ATGGGAACGTTTCAGAGCTTCAGAAAAGCCTATGGAGCTCTCAAGGATTCTACCAAGGTTGGCCTTGCCAAAGTCAATAGCGAATACAAGGAGTTGGATATTGCAATTGTAAAAGCTACCAATCACGTCGAATACCCTCCCAAGGAGCGTCATGTTCGAAAAATATTTTATGCAACATCAGCACACCAGCCACGAGCAGATGTATCATACTGCATTCATAAACTTTCTAAGAGACTTTCCAAAACACGAAGCTGGATAGTTGCTATAAAGGCATTAATAGTCATTCATAGGACTTTAAGAGAGGGTGATCCTACCTTTAGAGAAGAGATGCTTAACTACTCACGCAGGGGACATATTCTCCAAATATCCAATTTCAAAGATGATTCAAGCCCTCAAGCATGGGATTGTTCTGCATGGGTTCGAACCTATGCACTATTTTTGGAAGAAAGACTTGAATGCTTTAGGGTGCTTAAATATGATATAGAATCAGAACGTTTGACAAAAGCATCACCAACTGCAACTAAAGCACACAGTAGAACTCGATCACTGAATAGTGAGGAGCTGTTGGGGCAGTTACCTGCTCTGCAACAACTCCTATATCGTCTTATTGCTTGTCAGCCTGAAGGATGTTCTTATAGCAACTACCTAGTGCAGTATGCATTGGCTCTGGTTTTGAAAGAAAGTTTCAAAATATATTGTGCACTCAATGATGGAATCATCAATCTCGTGGATATGTTCTTTGATATGACAAGACATGACGCAGTGAAGGCTCTAAACATTTATAAAAGAGCTGGTCAACAGGCTGAGAATCTTGCTGACTTCTATGAATATTGCAAGGGCTTGGAACTTGCAAGAAATTTCCAGTTTCCAACACTGAGACAGCCACCTCCCTCTTTCCTTGCAACTATGGAAGAATACATTAGAGAAGCACCTCAAACAGGATATGTTAACAGGAGATTGGAATATCAAGAAAATGATGAATCATCTAAAGAAGATTCAGAATCCGATGAAACTGAAGAGCCTGAAGAAAATGAAGAACACTATGAGGAATTCAACGAGGAAGATTCGGTAGCAGGAGATGAAACACAATCTAAGGAGGAGGTGGAGGTGGAAGTTGAGCCTCCTCCTTTGATATCAACCGATGATGGTGCAAATGATTTGTTGGGGCTTAATGAAATAAATCTAAAAGCTATGGAACTGGAGGAAAACAATGCTATGGCTCTTGCAATTGTACCACCTGGTGGAAGTAACCCAAACAATCTTACATTGAGTACCATTGATGGAACTACTGGTTGGGAACTTTCATTAGTTACAGCACAAAGTAAACATACTGGTCAAGCCACAGATCGCAAAATGGCCGGTGGTTTTGATACGCTGTTATTGGACAGTCTGTATGAAGATGAAAATGCCAGAAGACAACTTCAACTCCAAAATGCAGGTTATGGACATGGAGGAACCGCCATGGATGTACAGAACCCTTTTGATCATTATAACCAACAAGATCCTTTTGTAATGTCCAACAACATAGCACCTCCAACCAATGTGCAATTGGCACTCATGGCTCAACAACAACAACAACAGATGATGTTCCAACATCCACAAATGTTGTACCAACAACAACCACAACAAAACAACATGATGATGATGATTCCTCACCAGCAGCAACCACAAAACCAATACTCTCAGCATCCAGATTCTCATAATCCATTTGGAGATCCTTTGCCATTACCAAACTATAATCAGAATTACATGCCCCAACAAGGAAATTACAATTTAATGTAG 1782 0.404 MGTFQSFRKAYGALKDSTKVGLAKVNSEYKELDIAIVKATNHVEYPPKERHVRKIFYATSAHQPRADVSYCIHKLSKRLSKTRSWIVAIKALIVIHRTLREGDPTFREEMLNYSRRGHILQISNFKDDSSPQAWDCSAWVRTYALFLEERLECFRVLKYDIESERLTKASPTATKAHSRTRSLNSEELLGQLPALQQLLYRLIACQPEGCSYSNYLVQYALALVLKESFKIYCALNDGIINLVDMFFDMTRHDAVKALNIYKRAGQQAENLADFYEYCKGLELARNFQFPTLRQPPPSFLATMEEYIREAPQTGYVNRRLEYQENDESSKEDSESDETEEPEENEEHYEEFNEEDSVAGDETQSKEEVEVEVEPPPLISTDDGANDLLGLNEINLKAMELEENNAMALAIVPPGGSNPNNLTLSTIDGTTGWELSLVTAQSKHTGQATDRKMAGGFDTLLLDSLYEDENARRQLQLQNAGYGHGGTAMDVQNPFDHYNQQDPFVMSNNIAPPTNVQLALMAQQQQQQMMFQHPQMLYQQQPQQNNMMMMIPHQQQPQNQYSQHPDSHNPFGDPLPLPNYNQNYMPQQGNYNLM* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0339 593 SUPERFAMILY ENTH/VHS domain 31 162 IPR008942 -
Vra5g0339 593 MobiDBLite consensus disorder prediction 358 372 - -
Vra5g0339 593 Gene3D ANTH domain 173 326 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Vra5g0339 593 ProSiteProfiles ENTH domain profile. 24 161 IPR013809 -
Vra5g0339 593 SMART enth_2 30 161 IPR013809 -
Vra5g0339 593 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 580 IPR045192 GO:0048268|GO:0072583
Vra5g0339 593 Pfam ANTH domain 31 309 IPR011417 GO:0005543
Vra5g0339 593 SUPERFAMILY GAT-like domain 178 309 - -
Vra5g0339 593 PANTHER CLATHRIN ASSEMBLY PLANT-LIKE PROTEIN 1 580 - -
Vra5g0339 593 MobiDBLite consensus disorder prediction 322 384 - -
Vra5g0339 593 Gene3D - 5 161 IPR008942 -
Vra5g0339 593 MobiDBLite consensus disorder prediction 553 593 - -
Vra5g0339 593 MobiDBLite consensus disorder prediction 327 357 - -
Vra5g0339 593 MobiDBLite consensus disorder prediction 579 593 - -
Vra5g0339 593 CDD ANTH_N 32 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0339 Vra-Chr5 3340903 3345585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0339 K20044 - gmx:100786060 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0339 5 3340903 3345585 Vra5g0339 5 3340903 3345585 ECH
Vra7g2526 7 45555757 45562504 Vra5g0339 5 3340903 3345585 PCT