Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0330 ATGTGGTTTTCCTTCTGGAGATCCAGAGATCGTTTTACCTTGGATCATCTCAGGTACTTAACTGATCAACTGACAAAAGTTCAAATAGTTAACGACGTTAATAAGGATTTTGTTATCGAGGCACTGAGATCTATTGCAGAGTTGATCACATATGGCGACCAACATGACCCAAGTTTTTTTGATTTCTTCATGGAAAAGCAAGTTGTGGGAGAGTTTGTACGTATACTTAAACTCAGCAAAAGTATTAGTATTCCACTTCAGTTACTACAAACAGTGAGTATTATGATCCAGAACCTAAGAAGTGAACATGCTATATATTATATGTTTAGTAATGAACATATGAATTACCTAATTACATATTCATTTGATTTTCGGAACGAAGAGCTACTGTCATACTACATATCCTTTTTAAGAGCAATAAGTGGAAAATTGAACAAGAGTACAATTTCTCTGCTCGTGAAGACTCAGGATGAGGAAGTAGTTTCATTTCCACTGTATGTTGAGGCAATTCGCTTTGCCTTTCATGAGGAGAACATGGTTCGCACTGCTGTACGTACTGTGACCCTTAATGTTTATCATGTTGGGGATGAATGTGTTAATAGATATATAACGAGTGCACCTCGCACAGAATACTTCTCAAACCTGGTTTCGTTTTTTAGGAATCAGTGTATGGATTTAAATAGACTGGTGTCTGAGGCACTCAAAAATCAAGGCTCAGATTCAACCTCTGCAATAATTTCTGCTGTAGATGAAATTGAGGATAACCTGTATTACTTTAGTGATGTTATCTCTGCTGGGATTCCTGATGTTGGGAGGTTAATAACAGACAGCATTTTGATGCTTCTGGTTTTTCCATTACTTCTTCCTTCCCTGAGAACACTGGACTCTAATGACATGCAAAGTGGTGTTGTCACTTCTCTCTACTTACTTTGTTGCATCTTAAGGATAGTCAAGATCAAAGATTTGGCAAATACCATAGTCGCTGCTCTTTTTTATCCCTTTGAGACCTTTACAAAATTTTCTGGGGGAAAAGTCAATGGCTATACATCTGATAGTGGTTTTACATCCGTAAGCCAAGAACCAGATGAGAATAGTGCAAAGTGCAAAGCAGAACACTTGACAGTGGAAGTGCCAAATTCTACTAGCTCTTCAGACTTATACCCTGAGAGTGTTATGTCAGAAAATAATCGTAGCAGTTCAAATTTGACATTGAGGGAGGTTTTGCTTGCATATGTTACCAAAGGGGATGATGTACAAGTTTTGGGTTCTCTGAGTGTGCTTGCTACTTTACTGCAAACTAAAGAACTTGATGAATCTATGCTAGACAAGCTTGGAATTCTTCCACAACGAAAACAGCACAAGAAGCAGTTATTGCAAGCTTTGGTTGGTGAGGCTTCAGGTGAAGAGCAGCTTTTTTCCTCTGAAAATAGCTGGATGAGGGATAGCATTGGCTGCGAGCTCAGTACCTATCTTGAAAAGATTAAGGAGCTGTATGGGTTATCTTTTCTCTGCTCTGATCTTGTCACAAGCCCTCGCGTGCCTAGATTTCAGGTGCTTGATGCGTTAGTTAGCCTCTTTTGTCGTTCTAATATTTCCGCAGAGACATTGTGGGATGGTGGTTGGCTTTTACGCCAGTTACTTCCTTACAGTGAAGCAGAATTCAATAGTCAACACCTGGAATTGCTGCAAGTAAGAACATACGAGGTTTCGTACAAGAATTCTGCTACTGCTCTTGTAAAGGAGGTTAGAGGCTTCTGGCCCGATCTTCTTATCACTGTTCTTTGCAATGAATGGAAAAAATGCAAAAGAGCGATGGAGTCATCTTACCCTCCAAAAGAACCAAAATGTGTACTTTTTCCTTCTCCAATATTATCTTCAGAAGACGATATACCTGACAGCTCATCATTTGCTGCTGGAGAAAGACTGCATGAATTGGCAAAGGTATTTGTAGTTCTGCACCAACTTCAAATATTCACTCTAGGTAGACCTTTGCCTGAGAAACCTCTTATTTATCCTCCTGGTGATCTCCCAGCGAATTCTCGTGCTCAGACATCTGGACTTGATTTGTCAGGCCCTAAACCAGGAACTGAAGTCAACCTTGTTAATGCTGTGCCTTGTAGAATTGCTTTTGAAAGGGGCAAAGAGCGCCATTTTTCCTTTCTAGCAATCTCTGTAGGAACGTCCGGGTGGCTTGTACTAGCAGAAGAGTTGCCATTAAAGAAGCCCTTTGGCGTTGTTCGGGTTGCTGCACCTTTGGCTGGGTGCAATCCCAAGATTGATGATAAACACTCAAGATGGTTACATCTGCGTATTAGACCATCTTCTTTACCTGTTCTGGATCCTGCCAAGTTCAATACCCACGGCAAATTAAAGTCAAAAGCTTTTGTGGATGGACGATGGACGTTGGCTTTCAGGGATGAGGAGTCTTGCAAGTCTGCTTTATGCATGATTGTTGAGGAGATTAATTTTCTGTGTGACGAGGTTCACAGAAGACTAAAACCATTGCTCAACCTTGAAACCTCATTGAATTTATCAGGTCTTGCAGACGAGGATTCCTCTACAAATACAACACCTCGAAATTCGGTGTAA 2589 0.4048 MWFSFWRSRDRFTLDHLRYLTDQLTKVQIVNDVNKDFVIEALRSIAELITYGDQHDPSFFDFFMEKQVVGEFVRILKLSKSISIPLQLLQTVSIMIQNLRSEHAIYYMFSNEHMNYLITYSFDFRNEELLSYYISFLRAISGKLNKSTISLLVKTQDEEVVSFPLYVEAIRFAFHEENMVRTAVRTVTLNVYHVGDECVNRYITSAPRTEYFSNLVSFFRNQCMDLNRLVSEALKNQGSDSTSAIISAVDEIEDNLYYFSDVISAGIPDVGRLITDSILMLLVFPLLLPSLRTLDSNDMQSGVVTSLYLLCCILRIVKIKDLANTIVAALFYPFETFTKFSGGKVNGYTSDSGFTSVSQEPDENSAKCKAEHLTVEVPNSTSSSDLYPESVMSENNRSSSNLTLREVLLAYVTKGDDVQVLGSLSVLATLLQTKELDESMLDKLGILPQRKQHKKQLLQALVGEASGEEQLFSSENSWMRDSIGCELSTYLEKIKELYGLSFLCSDLVTSPRVPRFQVLDALVSLFCRSNISAETLWDGGWLLRQLLPYSEAEFNSQHLELLQVRTYEVSYKNSATALVKEVRGFWPDLLITVLCNEWKKCKRAMESSYPPKEPKCVLFPSPILSSEDDIPDSSSFAAGERLHELAKVFVVLHQLQIFTLGRPLPEKPLIYPPGDLPANSRAQTSGLDLSGPKPGTEVNLVNAVPCRIAFERGKERHFSFLAISVGTSGWLVLAEELPLKKPFGVVRVAAPLAGCNPKIDDKHSRWLHLRIRPSSLPVLDPAKFNTHGKLKSKAFVDGRWTLAFRDEESCKSALCMIVEEINFLCDEVHRRLKPLLNLETSLNLSGLADEDSSTNTTPRNSV* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0330 862 Pfam Uncharacterised conserved protein 42 192 IPR019155 -
Vra5g0330 862 PANTHER PROTEIN TRANSPARENT TESTA 9 1 856 - -
Vra5g0330 862 PANTHER UNCHARACTERIZED 1 856 IPR039272 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0330 Vra-Chr5 3207608 3222465 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0330 K19513 - gmx:100789779 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0330 5 3207608 3222465 Vra5g0330 5 3207608 3222465 ECH
Vra7g2537 7 45666462 45675426 Vra5g0330 5 3207608 3222465 PCT