Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0310 ATGGTGGTGAAGAAGCCACGGATAGTGATAATTGGAGCAGGAATGGCAGGCCTCACAGCTGCCAACAAGCTCTACACTGCCACTGCCTCAAAGGACTTGTTTGAGCTATGTGTTGTGGAGGGTGGAAGCAGGATTGGTGGCAGAATCAACACCTCAGAGTTTGGTGGTGACCGTATTGAGATGGGTGCTACATGGATCCATGGAATTGGAGGCAGTCCAATTCACAAAATTGCTCAAGAAATCCACTCACTCCGCTCTGACCAACCTTGGGAGTGCATGGATGGGAACACTGATGAGGCCATCACCATTGCTGAAGGTGGCTTCCATCTCCACCCTTCCATTGTTGACCCCATTACAAAGCTCTTCAACAACCTCATGGAATATTCTCAAGGGAAGCTCAATGAAGCCACTGCAAAGGGTGAACTTGAAAGTTATCACAAGCTGGCTGCTTTGGCTGCTAAGGTTGCTTCCAACAGGTCTGGTAACAACAACCTTAGTATTGGCTCTTTTCTGAGACAAGGCCTGGAGACTTACCAGATTTCAAAGGAGCAAGAGGAGGTCAAAGGGTGTGGGGAGTGGAGCAGGAAGTTACTTGAGGAAGGAATATTTGGAATGCACGAGAACAACCAGAGGACCTATACATCAGCTGATGACCTCTTGACACTGGATTATAGTGCTGAAAGCGAGTACAGAATGTTCCCAGGTGAAGAAATCACAATTGCTAAAGGGTACTTGAGCATAATTGAGTCCTTAGCTTCTGTGTTGCCACCTGGTTTGATTCAGTTAGGTAGAAAAGTCACAAGGATTGAGTGGCAGCTTGATGAGAGGAAGGGTGTGGAAAATGGCTGTTGTTCTTCTAAGCCTGTGAAGCTGCATTTTTGTGATGGCTCCGTTATGTCCGCTGATCATGTCATTGTCACAGTTTCACTGGGAGTGTTAAAATCTGCTATTCGTGATGATTCAGGTATGTTCTGTCCTCCTCTTCCCTCTTCCAAAACTGAGGCAATTTCAAGGCTTGGCTTTGGGGTTGTTAACAAGTTGTTTATGCAATTAAGTCCAAAACATGGAGGAGGGAAACATGAATACCAGCATGAACATGTAAATGAAGACTCAGACAAAGGGTTCCCTTTCCTGCAAATGGTTTTCCATTCACCTCAATCTGGAACGAGGCACAAGAAAATACCCTGGTGGATGAGGAGGACAGCCACCCTTTTCCCCATATACAACAATTCTAGTGTCCTCTTGTCTTGGTTTGTGGGGGAAGAAGCACTAGCACTTGAGTCACTCAAAGATGAGGAGATCATAAATGGAGTTTCATCCACAGTCTCGTGCTTTCTACAGCATTCTCAGTGGCAAAAGGGTTCCAGTTCACATAGATTGTGCAATGGGAATGCGAATTCTGAGGAGAGATCTCAAGAAAATGAGGTGAAGTTCAGTAAAGTCTTGAAGAGCAAATGGGGAACTGATCCCTTGTTTTTAGGCTCATACAGTTATGTTGCTGTAGGGTCAAGTGGTGATGATTTAGATGCAATGGCCGAGCCATTGCCAAAAGATAGCAGTTGTCAGCCTTCTGCTTCTTCTCCACTTCAAATTTTGTTTGCAGGGGAAGCAACTCACAGAACTCATTATTCCACAACTCATGGAGCTTACTTCAGTGGTCTCAGGGAAGCCAATAGGCTTCTTCAACATTATCATTGTGTTGGAATTTACAATAACTAG 1719 0.4514 MVVKKPRIVIIGAGMAGLTAANKLYTATASKDLFELCVVEGGSRIGGRINTSEFGGDRIEMGATWIHGIGGSPIHKIAQEIHSLRSDQPWECMDGNTDEAITIAEGGFHLHPSIVDPITKLFNNLMEYSQGKLNEATAKGELESYHKLAALAAKVASNRSGNNNLSIGSFLRQGLETYQISKEQEEVKGCGEWSRKLLEEGIFGMHENNQRTYTSADDLLTLDYSAESEYRMFPGEEITIAKGYLSIIESLASVLPPGLIQLGRKVTRIEWQLDERKGVENGCCSSKPVKLHFCDGSVMSADHVIVTVSLGVLKSAIRDDSGMFCPPLPSSKTEAISRLGFGVVNKLFMQLSPKHGGGKHEYQHEHVNEDSDKGFPFLQMVFHSPQSGTRHKKIPWWMRRTATLFPIYNNSSVLLSWFVGEEALALESLKDEEIINGVSSTVSCFLQHSQWQKGSSSHRLCNGNANSEERSQENEVKFSKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDAMAEPLPKDSSCQPSASSPLQILFAGEATHRTHYSTTHGAYFSGLREANRLLQHYHCVGIYNN* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0310 572 SUPERFAMILY FAD-linked reductases, C-terminal domain 340 498 - -
Vra5g0310 572 Gene3D - 458 568 IPR036188 -
Vra5g0310 572 Gene3D - 92 450 - -
Vra5g0310 572 Pfam Flavin containing amine oxidoreductase 15 561 IPR002937 GO:0016491
Vra5g0310 572 SUPERFAMILY FAD/NAD(P)-binding domain 3 564 IPR036188 -
Vra5g0310 572 PANTHER POLYAMINE OXIDASE 5-RELATED 1 568 - -
Vra5g0310 572 PANTHER FLAVIN MONOAMINE OXIDASE 1 568 - -
Vra5g0310 572 Gene3D - 8 338 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0310 Vra-Chr5 2952754 2955545 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0310 K12259 - gmx:100783032 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0310 5 2952754 2955545 Vra5g0310 5 2952754 2955545 ECH
Vra7g2562 7 45935095 45937004 Vra5g0310 5 2952754 2955545 PCT