Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0307 ATGAGTGAAATAGCAGCAAGAGATTCTTCAGTTTATGGTGCCATGGCAAGTTGGTTCACACCCTCCTATCTCTTCATCTTCATCAACCTTGTCATTGGAACCATAGCCATCACCTCTCGTTTCACCACCACACCAAAACGCCAACGCCAACACCAACTCATCCGTTCTCCCTCTTTGCTTGACAGATTCACATCCTTCAACTTACGTTATCACAAACATCAAACCACAGCAACGTTAAAGCCTCACGACGTTGTTGTGGAGTCTGTCCAGACTCTAGACTCGCCTCGGCCGGTTCAAATCGGTTCCTTCGATACGACTGAGACCCGAGAAGGTGATGAAGTTAAAATTGATAACTCACCCCAGTTGGACCGGATTAGGTCTTTTAGTTTTCGTAGAACAGAAAGTGAAAGATCCGAGGCGGTCCAAAATTCTGACTCTGGAATGAATCTGGTACGAACTCCATCTTTGTTGGAGCGCGTTAGGCGTTTTAGTCTGGAATTAGGTAAAGTGGAGAAGGAAAGTTGTGACTCGGTTCAGCAGCAATTAAGCCGTGCTCCTTCCTTCCTGCAGCGGCTTAAGTCCTTGACCTTTGACAGAACGGAGTCCGAAGCTGAGGTGAGGGATGGTGGGGAGTTTGTGGAGGAAAGGGAAGAAGAGGAAGGAGTGGACGCCAAGGCTGATGATTTCATCAACAGGTTTAGGCAGCAACTCAGGTTGCAGAGGCTTCACTCTATTCTACGATGCAGGGATATGCTCACACGAAACTCATAA 771 0.4747 MSEIAARDSSVYGAMASWFTPSYLFIFINLVIGTIAITSRFTTTPKRQRQHQLIRSPSLLDRFTSFNLRYHKHQTTATLKPHDVVVESVQTLDSPRPVQIGSFDTTETREGDEVKIDNSPQLDRIRSFSFRRTESERSEAVQNSDSGMNLVRTPSLLERVRRFSLELGKVEKESCDSVQQQLSRAPSFLQRLKSLTFDRTESEAEVRDGGEFVEEREEEEGVDAKADDFINRFRQQLRLQRLHSILRCRDMLTRNS* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0307 256 PANTHER DUF4408 DOMAIN PROTEIN 9 141 - -
Vra5g0307 256 PANTHER DUF4408 DOMAIN PROTEIN 216 255 - -
Vra5g0307 256 PANTHER COTTON FIBER (DUF761) 9 141 - -
Vra5g0307 256 PANTHER COTTON FIBER (DUF761) 216 255 - -
Vra5g0307 256 Pfam Cotton fibre expressed protein 220 254 IPR008480 -
Vra5g0307 256 Pfam Domain of unknown function (DUF4408) 10 41 IPR025520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0307 Vra-Chr5 2916606 2917731 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0307 - - vra:106761585 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0307 5 2916606 2917731 Vra5g0307 5 2916606 2917731 ECH
Vra7g2565 7 45970683 45971781 Vra5g0307 5 2916606 2917731 PCT