Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0280 ATGTTGTCGAGAACGGAGGCTGGGAAGAAGAGTGGTGGGGGTTCTAATGCCCCGAAGAAGTTGTTAAAGGATTTTGAAACCATGAACAAAGCTTTGTACTTGGATAAAGGGTCTGCAAGGAGTTCAATACCTGGTGCAAATTCACGATCTAAATTCACTGGGAAATCTCAGTTACCTGATCCCAAATCTAAGTCTAAAACCAGTGTTAATAATAACAATGATGATGGTGTTCAAAAGGATAAGAAGTCCATTTGGAATTGGAGGCCTCTAAGAGCCCTTTCCCACATCCGAAACAAGAGGTTTAATTGTAGTTTTTATCTGCAAGTTCACCTGATTGAAGGGTTGCCTCCAAGTTTTGATAATGCCAGTCTTGCTGTGTACTGGAAAAGGCGTGATGGGGTTCTTGTGACTGGTCCTGCCAAGGTGATTCAGTCTGTGGCTGAATTTGAAGAGAAGTTGACCTACACTTGCTCAGTGTATGGCAGCAGGAGTGGACCTCACCATTCTGCAAAGTATGAAGCAAAGCATTTTTTGCTCTATGCTTCGCTTCTGAGTGCCCAGGAGATGGATTTGGGAAAGCACCGGGTGGATCTGACAAGGTTGCTTCCTCTCACTCTGGAGGAGCTCGAGGAGGAGAAGAGCTCGGGGAAGTGGACTACTAGTTTTCGATTATCGGGAGTGGCTAAGGGTGCTGTGATGAATGTCAGTTTTGGCTACACGGTTGTTGGTGATAATGCTAGTACTACCAGAGACAGCCATAATGCTTCTAACGTATTGAGTTCCAGGCAGAATAGTTTTGCTCTGATGAAACAAGATGTTAAACCCCGACAGTTTGATGCAAGCAGCAGGATGAGGCGAACCACGAGTTTGCAGTTATCACCTCGAGCTTCAGATGAGGTAAAGGATCTTCATGAGGTGTTGCCATTGACTGGGTCTGGACTAGCCAGCTCAATAGACATCTTATATAAGAAATTTGATGAAGAAAAGGCTAGTTCTATGCTTAGCGAAGCAGAACTTGATTCGTTCTCCGAAAATCTTGGGTCAATCAAGCCAGATGCATATGCTTCTGATTTTGGAAAAGAAACATTTGACGAGCATGTGAGTAAGGCTGAAGATAAACGTCCAGTGCATGAGGAACCTGAAGAACCTGAACTTTCAGTGTTTCAAGAAAAGCTGGAGATATTTAAACCAGACTACAATCCTTTACCTGATTCCGCAAATGAAAACCCTGAACAGTTTCAAGGTAATGATTTTTTTGTTGTTGATAAGGGAATAGAACTGTCATCAAATGAACCTGTTATAAGAGAGGAATTCATTGGGAAGGCTCCTGAGGATGCTTCTACAGTTGATATTGCCTATACCCTTGGCATATCAGGTATACAAGAACCTTTTGAAGAGAGTGTTAAACAGGATTTTCTGGATGAGGTAAATGATATTTCTAAGGACCAGGTAGTCGTAGAGGAATTTGCTAGCAAAGAGGATGGCTTTGACAGTGATACTAACGAGCTGCTCCTGCAAGAACTAGAATCTGCTTTAAATAGTGTATCAAATTTGGAGAGAGTAGCACTAGAATCTCCAGAAACAGCAGCATTTAAATCTGAACATAAGATGACAAAGTCTCATAACTTGGATGATGTTACAGAATCAGTTGCCAGTGAGTTTTTAAGCATGTTAGACTTAGAACGTAGTCCCATGGCCTTGAGTTCTGAAAGTGAGCCCGAATCTCCAAGAGAGCTACTTTTAAGACAATTTGAGAAGGAGGCTTTGGATGGGGACTTTTCCTCTTTGTTTGATTTTGAAATGAACCATGATAATGAAGCAGATGGTGGCTATGATGGTTCCGCCGCATCTGAGCAGTGGAACTTTTCTGAAGATGTCAGGTCATCATCCCTTTTGCAAGACCTGCAGGAGGAGCATCTAGCCGAGTCTCAGGATGTGAGAAGCAAACAGAGGGCTCAGACACTAGAAGACTTGGAAACAGAAGCCTTGATGCGTCAATGGGGTTTGAATGAGGAGGCTTTTCATCATTCTCCACCAAAAGATTTTACTGGTTTTGGAAGTCCAATTCCTTTGCCACCTGAAGAGCCTCCTATATTGCCTCCTCTTGATGATGGGTTGGGCCCTTTTCTTCAGACAAAAGACGGGGGTTTCCTACGCTCTATGAATCCCTCACTTTTCAAGAATTCTAAAAGTGGTGGGAGTTTAATCATGCAGGTATCCAACCCTGTCGTTGTACCAGCAGAAATGGGTTCTGGGATAATGGAGGTTTTGCAGTGTTTGGCTTCAGTGGGAATTGAGAAGCTCTCAATGCAGGCTAAGGAGTTGATGCCTCTAGAAGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCCATGCCTGTCTTAGAAGGAGCAGAGAGGCAAAGCCATTTGCAGCACAATCCAATAACAAGGCAGGACAGTGCTCATGTGCAAAGGGACTTGAAAGGATCAGTACAAAAGTCTGGCAAGTTTAGTTCAAGAACAGTGGCCAACCAACCAGGATCAGAGTTTGTTTCGGTTGAAGACCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAATCTGGGATGTCAGAAGAGGAGGCACCATCAAACATCATTGCACAGTCCATTGGGGATATTTCGGCTCTGCAGGGCAAGGGTGTTGATATTAGTGGGTCCCTTGGCCTGGATGGAGCTGCTGGTTTGCAGTTGATGGATGTAAAAGATGGCGGTGACGGTGGTGACGGTGTGGATGGGATAATGGGCCTATCATTAACTCTTGATGAATGGATGAGGCTGGATTCCGGTGAGATTGATGATATAGATAATATCAGTGAGCATACTTCCAAACTTCTTGCAGCCCATCATGCCAACTCTTTTGACTTCATTCGTGGGAGTTCCAAGGGAGAGAAGAGACGAGGCAAAAGCAGAAGATGTGGTTTGCTAGGAAACAATTTCACAGTAGCATTAATGGTGCAACTCCGTGACCCTCTGAGAAATTACGAACCGGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGAGAGTTCATGCTTCCAAAGCAAAAGATTTTCAACAGTGTCTCTTTGATGATGAAAAACAATGACGTGGATGATGATGATAGGGAAATCCTTGCGAAGGTGGACATGAAGGACACCAAGAACGAGGAGAATAGTTCCGAAGAGGAAGAGGGCATTCCTCAGTTCAGAATCACAGAAGTCCATGTGGCAGGTCTGAAGCCTGAGCCTCAGAAAACGAAGCTCTGGGGCACTTCAAATCAGCAACAATCTGGTTCTCGCTGGTTGCTTGCAAATGGAATGGGGAAGAACAATAATAACAAACTTCCATTGATGAAGTCAAAGGGTTCATCTAAATCTAATGCTCCAGTTACCTCAAAGGTGCAACCTGGTGACTCCTTGTGGAGCATATCATCTCGTCTTTTTGGCAATCGAGGGAAATCACATGTAAGAAACCCGGATGTCGTTATGCCAAATGACACTATAAGACTCAGCTGA 3552 0.4389 MLSRTEAGKKSGGGSNAPKKLLKDFETMNKALYLDKGSARSSIPGANSRSKFTGKSQLPDPKSKSKTSVNNNNDDGVQKDKKSIWNWRPLRALSHIRNKRFNCSFYLQVHLIEGLPPSFDNASLAVYWKRRDGVLVTGPAKVIQSVAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASLLSAQEMDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGVAKGAVMNVSFGYTVVGDNASTTRDSHNASNVLSSRQNSFALMKQDVKPRQFDASSRMRRTTSLQLSPRASDEVKDLHEVLPLTGSGLASSIDILYKKFDEEKASSMLSEAELDSFSENLGSIKPDAYASDFGKETFDEHVSKAEDKRPVHEEPEEPELSVFQEKLEIFKPDYNPLPDSANENPEQFQGNDFFVVDKGIELSSNEPVIREEFIGKAPEDASTVDIAYTLGISGIQEPFEESVKQDFLDEVNDISKDQVVVEEFASKEDGFDSDTNELLLQELESALNSVSNLERVALESPETAAFKSEHKMTKSHNLDDVTESVASEFLSMLDLERSPMALSSESEPESPRELLLRQFEKEALDGDFSSLFDFEMNHDNEADGGYDGSAASEQWNFSEDVRSSSLLQDLQEEHLAESQDVRSKQRAQTLEDLETEALMRQWGLNEEAFHHSPPKDFTGFGSPIPLPPEEPPILPPLDDGLGPFLQTKDGGFLRSMNPSLFKNSKSGGSLIMQVSNPVVVPAEMGSGIMEVLQCLASVGIEKLSMQAKELMPLEDITGKTMQQVAWEAMPVLEGAERQSHLQHNPITRQDSAHVQRDLKGSVQKSGKFSSRTVANQPGSEFVSVEDLAPLAMDKIEALSMEGLRIQSGMSEEEAPSNIIAQSIGDISALQGKGVDISGSLGLDGAAGLQLMDVKDGGDGGDGVDGIMGLSLTLDEWMRLDSGEIDDIDNISEHTSKLLAAHHANSFDFIRGSSKGEKRRGKSRRCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLALIQVEREFMLPKQKIFNSVSLMMKNNDVDDDDREILAKVDMKDTKNEENSSEEEEGIPQFRITEVHVAGLKPEPQKTKLWGTSNQQQSGSRWLLANGMGKNNNNKLPLMKSKGSSKSNAPVTSKVQPGDSLWSISSRLFGNRGKSHVRNPDVVMPNDTIRLS* 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0280 1183 MobiDBLite consensus disorder prediction 38 80 - -
Vra5g0280 1183 MobiDBLite consensus disorder prediction 1122 1149 - -
Vra5g0280 1183 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1182 IPR039614 -
Vra5g0280 1183 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g0280 1183 MobiDBLite consensus disorder prediction 277 296 - -
Vra5g0280 1183 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1182 - -
Vra5g0280 1183 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 98 243 IPR019448 -
Vra5g0280 1183 Coils Coil 501 521 - -
Vra5g0280 1183 MobiDBLite consensus disorder prediction 41 74 - -
Vra5g0280 1183 ProSiteProfiles C2 NT-type domain profile. 93 241 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0280 Vra-Chr5 2642445 2646905 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0280 - - gmx:100815106 1715.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0280 5 2642445 2646905 Vra5g0280 5 2642445 2646905 ECH
Vra7g2599 7 46252130 46256545 Vra5g0280 5 2642445 2646905 PCT