Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0277 ATGAGTTTCATCTTCGGAAAGAGAAAAACACCCGCGGAGCTTCTGCGGGAAAATAAGAGGATGCTGGACAAATCAATTAGAGAAATTGAGCGCGAGCGGCAAGGTTTGCAAACACAAGAGAAGAAATTGATTTTGGAGATAAAGAAAAGTGCTAAACAAGGCCAGATGGGAGCTGTTAGAGTCATGGCAAAAGATCTGGTTAGAACACGGCATCAGATTGAGAAGTTTTATAAGCTAAAATCTCAGCTCCAAGGTGTATCCCTCCGAATTCAGACTTTGAAATCAACACAAGCAATGGGTGAGGCTATGAAAGGCGTGACAAAGGCCATGGGGCAAATGAATAGGCAGATGAACTTGCCATCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAATGAGAAGATGGAATTGACATCTGAGATGATGGGAGATGCAATAGATGATGCTTTGGAAGGAGAAGAAGATGAAGAAGAAACTGAGGATCTAGTGAACCAAGTTCTTGATGAGATTGGAATTGACATCAACCAAGAGCTTGTAAATGCACCATCATCAGCTGTTGCTGCTCCAGCTGCAAAGACCAAGGTAGCTCAAGTTGAAACTTCTGGGAATGATGATGGAGGGATAGATAGTGACCTACAGGCAAGGTTAGACAATTTGAGAAAAATGTAG 672 0.4211 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELTSEMMGDAIDDALEGEEDEEETEDLVNQVLDEIGIDINQELVNAPSSAVAAPAAKTKVAQVETSGNDDGGIDSDLQARLDNLRKM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0277 223 Pfam Snf7 17 186 IPR005024 GO:0007034
Vra5g0277 223 MobiDBLite consensus disorder prediction 198 223 - -
Vra5g0277 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Vra5g0277 223 Coils Coil 12 46 - -
Vra5g0277 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Vra5g0277 223 Coils Coil 119 139 - -
Vra5g0277 223 Gene3D - 6 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0277 Vra-Chr5 2579223 2583887 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0277 K12191 - gmx:100526885 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0277 5 2579223 2583887 Vra5g0277 5 2579223 2583887 ECH
Vra7g2604 7 46313983 46316960 Vra5g0277 5 2579223 2583887 PCT