Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0273 ATGGCTTCCACTTCTGCACTTTCAATGGCTATGCCGGTAACTTGTGCCAGCCACAAGAAGGTGGTTCCTACCTCTGATGCGTTCTTCAAGCCACTGCCTCTACGGTCTTCAAAGGCACTGACAGCATCAAATACCAATGGAAGGTTTCAAGTGAGAGCCTCCATGAAGGAGAAAGTTGTCACTGGGCTCACAGCAGCTGCATTGACGGCTTCAATGATGGCTCCTGATGTGGCCGAGGCTGCTTCTGTCTCACCTTCTCTCAAGAACTTTTTGCTCAGCATCGCCGCCGGTGGAGTTGTTGTTGTGGCCATTATTGGTGTTGTAATTGGTGTTGCCAATTTCGATCCCGTCAAACGAAGCTGA 363 0.5014 MASTSALSMAMPVTCASHKKVVPTSDAFFKPLPLRSSKALTASNTNGRFQVRASMKEKVVTGLTAAALTASMMAPDVAEAASVSPSLKNFLLSIAAGGVVVVAIIGVVIGVANFDPVKRS* 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0273 120 Pfam Photosystem II reaction centre X protein (PsbX) 83 120 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vra5g0273 120 PANTHER OS07G0673550 PROTEIN 1 120 - -
Vra5g0273 120 Gene3D Single helix bin 82 120 - -
Vra5g0273 120 PANTHER EXPRESSED PROTEIN 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0273 Vra-Chr5 2545590 2546161 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0273 - - gmx:100306291 167.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0273 5 2545590 2546161 Vra5g0273 5 2545590 2546161 ECH
Vra7g2606 7 46320367 46320976 Vra5g0273 5 2545590 2546161 PCT