Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0270 ATGATGCTGAGTCTGCAAACTCGTTTACCGTCGTTTTCCCTCGTTTTCTCTCCGTTCAAACCCTATTCTCCACCCTTCAAATCCAAACCCCGTTTCTCGACGATCAGAATGTCCTCAGGCCAAAGTGTCGTGGAGCACATTGTCCTCGTCAAGGTCAAAGGTGGAACGGAGCCTAGCAAGGTCAGCGCCATGGTCAACGCCATGAACTCGTTAGCCTCCATCGACGGGGTCCTGAACCTCACCGCGGGCCCACTTCTCCGTAACGGACCCACCACCGCTTTCACCCATATGCTCCACAGCCGCTACCACTCCAAGGATCACCTTCAAGCCTACAACGTGCACCCGACCCACATCGCCGCCGTCACCGGCTTCATTTTTCCAGTCTGCGAGGACATCATGGTCGTCGACTGGGTCGGCGCAAAAACGATCCTTAATCCGTCGGCGACGGGATCGGGCCTCCGCGTGAGGTTTTTGAAGCTGAAGGGGGGCGGTGGCGACGACCACGACGAAATTAAGGTTAAAGATGAGGTTTTGAGTGTGGTAGGAGGAATGAAGGAGGGTGTTGGAGAATTGTCTTACGGCGAGAATTTCTCGCCGGAGAGAGCGAAGGGGTTCTCGATCGCTTCGCTGTCTATTTTCCCAGGACGGAAGGAACTGGAGAGTGTGAACTTGGAGGAAGGGTTGGAGAAGGTTGTGGAACATGTGGAGGACACCATTGTTGTTGACTATGTGGTGCCTTAG 741 0.5452 MMLSLQTRLPSFSLVFSPFKPYSPPFKSKPRFSTIRMSSGQSVVEHIVLVKVKGGTEPSKVSAMVNAMNSLASIDGVLNLTAGPLLRNGPTTAFTHMLHSRYHSKDHLQAYNVHPTHIAAVTGFIFPVCEDIMVVDWVGAKTILNPSATGSGLRVRFLKLKGGGGDDHDEIKVKDEVLSVVGGMKEGVGELSYGENFSPERAKGFSIASLSIFPGRKELESVNLEEGLEKVVEHVEDTIVVDYVVP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0270 246 SUPERFAMILY Dimeric alpha+beta barrel 43 138 IPR011008 -
Vra5g0270 246 Pfam Stress responsive A/B Barrel Domain 44 137 IPR013097 -
Vra5g0270 246 SMART Dabb_2 44 139 IPR013097 -
Vra5g0270 246 SMART Dabb_2 153 245 IPR013097 -
Vra5g0270 246 Gene3D - 36 140 - -
Vra5g0270 246 ProSiteProfiles Stress-response A/B barrel domain profile. 152 246 IPR013097 -
Vra5g0270 246 PANTHER STRESS-RESPONSE A/B BARREL DOMAIN-CONTAINING PROTEIN UP3 33 246 - -
Vra5g0270 246 PANTHER - 33 246 IPR044662 -
Vra5g0270 246 ProSiteProfiles Stress-response A/B barrel domain profile. 44 137 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0270 Vra-Chr5 2523098 2524019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0270 - - var:108330950 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2609 7 46346829 46348099 Vra5g0270 5 2523098 2524019 PCT