Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0228 ATGGCGCATCATCCTTTGACGCACTCTCACTCTTTCCGCGAGAGGATTGATGAAACTCTCTCGGGTAACAGGAATGAAATTTTGGCCCTCCTGTCAAGGCTTGAAGCCAAGGGCAAGGGAATCCTGCAACACCACCAGGTCATTGCAGAGTTTGAAGAAATCCCTGAGGAGAACAGGAAGAAGCTGCAAGATGGAGCTTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTGCTGCCACCTTTTGTTGCTCTGGCTGTTCGACCAAGGCCTGGTGTTTGGGAGTATCTACGTGTGAATTTGCACTTGCTCGTCGTTGATGAGCTACGTCCTGCTGAGTATCTGCGTTTCAAGGAGGAACTTGTCGAGGGAAGTGCTAACGGGAACTTTGTGCTTGAGTTGGACTTTGAACCATTTAATGCCTCTTTCCCTCGTCCAACTCTGAACAAGTCCATTGGGAATGGCGTGGAGTTCCTCAACCGCCATCTTTCAGCCAAACTCTTCCATGACAAGGAGAGCATGCAGCCACTGCTTGAATTCCTCAGGCTTCACAGTTATAAGGGCACGACTATGATGCTGAATGACAAAGTTCAGAACCTGAATTCTCTCCAACATGTTTTGAGAAAAGCAGAAGAGTATCTAACTTCTGTTGCTCCTGCAACGCCCTACTCAGAATTTGAAAGCAGATTCCGGGAGATTGGTTTGGAGAGGGGATGGGGTGACACCGCCGAGCGGGTCCTCGAAATGATCCAGCTTCTCTTGGATCTTCTGGAGGCACCTGATCCTTGCACCCTTGAGACATTCCTTGGAAGAGTCCCTATGGTCTTCAATGTTGTAATCCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTCTTGGGATACCCTGACACTGGTGGGCAGGTTGTTTACATCCTGGATCAAGTTCGTGCCTTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCTTGGATATCACTCCTCGTATTCTCATTATCACTCGTCTTCTCCCTGATGCAGTAGGAACAACCTGTGGCCAACGTCTAGAGAGGGTATATGATACTGAATATTGTGACATTCTCCGAGTTCCTTTCAGAACAGAGAAGGGAATTGTTCGCAAATGGATCTCTAGATTCGAAGTCTGGCCATACCTAGAGACTTATGCTGAGGATGTTGCTGTTGAACTTGCTAAGGAGTTGCAAGCCAAGCCAGATCTGATAGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTAGCACATAAATTAGGAGTAACTCAGTGTACCATTGCTCATGCTCTAGAAAAGACCAAATACCCTGAGTCTGACATTTACTGGAAAAAATTCGAAGAGAAATATCACTTTTCATGCCAATTTACTGCTGATCTTTTTGCAATGAACCACACAGACTTTATCATCACCAGCACCTTCCAAGAGATTGCTGGGAGCAAAGACACTGTTGGACAGTACGAGAGTCACACTGCCTTCACCCTTCCTGGTCTTTACCGAGTTGTTCACGGTATTGATGTGTTTGATCCAAAGTTCAACATTGTCTCTCCAGGAGCTGATATGGGCATATACTTCCCATACACTGAAACTGAGCGTAGGTTAACAAATTTCCACCCTGAGATTGAAGAGCTTCTTTACAGCTCAGTGGAGAACGAGGAACACATATGTGTATTGAAGGATCGCAACAAGCCAATCATCTTCACCATGGCAAGACTTGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTACGGAAAGAACGCGCGGCTCCGGGAGTTGGTGAACCTAGTTGTTGTTGCTGGAGACAGGAGGAAGGAGTCGAAGGACTTGGAAGAGAAGGCTGAGATGAAGAAGATGTATGGCCTCATTGAGACCTACAAGTTGAATGGCCAATTCAGATGGATCTCCTCTCAGATGAACAGAGTTAGAAATGGAGAGCTCTACCGTGTAATATGTGACACAAAGGGTGCTTTTGTGCAGCCTGCGGTATATGAAGCCTTTGGGTTGACAGTGGTTGAAGCCATGACTTGTGGATTGCCAACATTTGCCACATTCAATGGTGGTCCTGCTGAGATCATCGTGCATGGAAAATCTGGATACCACATTGACCCCTACCATGGTGACCGTGCTGCTGAGATCCTTGTTGACTTCTTCGAGAAGAGCAAAGCAGACCCATCTCACTGGGACAAAATCTCCCAGGGAGGACTCAAGCGTATTCAAGAGAAGTACACATGGCAGATTTACTCTGACAGGCTCTTGACACTGACGGGTGTCTATGGCTTCTGGAAGCATGTCACCAACCTTGAACGCCGTGAGAGCAAACGTTACCTCGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCTGAGTCTGTTCCCCTTGCCATTGAAGAGTAA 2421 0.4676 MAHHPLTHSHSFRERIDETLSGNRNEILALLSRLEAKGKGILQHHQVIAEFEEIPEENRKKLQDGAFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNLHLLVVDELRPAEYLRFKEELVEGSANGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHDKESMQPLLEFLRLHSYKGTTMMLNDKVQNLNSLQHVLRKAEEYLTSVAPATPYSEFESRFREIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRVPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILIITRLLPDAVGTTCGQRLERVYDTEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYAEDVAVELAKELQAKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMGIYFPYTETERRLTNFHPEIEELLYSSVENEEHICVLKDRNKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATFNGGPAEIIVHGKSGYHIDPYHGDRAAEILVDFFEKSKADPSHWDKISQGGLKRIQEKYTWQIYSDRLLTLTGVYGFWKHVTNLERRESKRYLEMFYALKYRKLAESVPLAIEE* 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0228 806 Gene3D - 25 145 - -
Vra5g0228 806 PANTHER - 1 805 IPR012820 GO:0005985|GO:0016157
Vra5g0228 806 Gene3D Glycogen Phosphorylase B; 527 753 - -
Vra5g0228 806 Pfam Glycosyl transferases group 1 564 738 IPR001296 GO:0016757
Vra5g0228 806 Pfam Sucrose synthase 9 553 IPR000368 GO:0005985|GO:0016157
Vra5g0228 806 Gene3D - 146 275 - -
Vra5g0228 806 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Vra5g0228 806 TIGRFAM sucr_synth: sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Vra5g0228 806 Gene3D Glycogen Phosphorylase B; 280 796 - -
Vra5g0228 806 PANTHER SUCROSE SYNTHASE 1 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0228 Vra-Chr5 2005493 2011269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0228 2 806 Glycosyltransferase AT3G43190 83.975 0.0 1425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0228 K00695 - gmx:100806761 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0228 5 2005493 2011269 Vra5g0228 5 2005493 2011269 ECH
Vra7g2656 7 46814423 46819718 Vra5g0228 5 2005493 2011269 PCT