Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0226 ATGGCATCTTCGGAGAATGAACCTTCTTCTCACTCTTCACCTCCTCCTCCTCCCGCAAATATTTGTTTGCAAAAGTTCCGGCTCTATGAGACTCTATCGAACTTTTACATGATAGGAAGGGACAACAGCAGGACTTATTGGAAAGTGTTAAAGATTGACCGTCTAGATCCATCCGAGCTGACTGTGCTTGAAGATTCCACCACATATACAGAACGTGAATGTTCTGATCTGTTGAGACGTATACATGAGGGGAATAGGTCCACAGGTGGACTGAAATTTGTTACAACTTGTTATGGAATTGTTGGGTTCATAAAATTTTTAGGGCCATACTACATGGTGGTCATCACAAAAAGAAGGAAAATTGGTGCCATCTGTGGTCATACAGTATATGCTGTCTCAAAGAGTGAGACGATTCCACTGCAAAATCCTTCTGTTCAATCTAACATCGATGAGAACAGATACAGGAAACTCCTATTGACGGTTGACCTTACAAAGGATTTCTATTTTAGCTACTCATACTATATCATGCGTAGTCTTCAAAGGAATTTGTGTGATAGTGAGACAGGCCACGTCCTTTATGAGAACATGTTTGTCTGGAATGAGTTTTTGACTCGAGGAATTAGGAATCACCTCCAGAATACTATTTGGACAGTTGCACTGGTATACGGCTTTTTTAAACAGGAAACACTTGCAATATCTGGGCGGGAGTTCATTCTTACTCTCATTGCAAGACGATCTCGCCATTATGCTGGTACTAGATATTTGAGACGAGGATTAAATGACAAGGGGAGAGTAGCAAATGATGTGGAGACAGAGCAAATTGTATTTGAGGATGTTCCTGAAGGTCTTCCAGTCCAAATATGCTCTGTTGTGCAGAATCGGGGTTCAATCCCCCTGTTCTGGTCACAGGAAACTTCACGTCTGAATCTTAAGCCTGATATCATATTGTCAAAGAAAGATCAGAATTATCAAGCCACCAAACTTCACTTTGAAAATCTCGTCAAAAGATACGGGAATCCCATAATAATTTTGAATTTGATAAAGTCGCATGAGAGGAAGCCTCGTGAGTCCATTCTTCGTTCTGAGTTTGGTAATGCCATCAATTTCATTAACAAAGATTTATCAGAGGAGAACAGATTGAGGTTTCTTCATTGGGATCTTAAACATTTTCAGAGCAAAGCTACAAATGTTTTGCTACTTCTGGGAAAAGTGGCTACATATGCTTTGACATTAACAGGTTTTTTATATTGCCAAGTGTCACCAACTCCTAGACTCGAAGAATGTATAGAAAGGCCACCTATTAATTTCGTATATGACAATATTGATAAGGGAAGCTTTCAACCCACGAGACATGTTGATGTTGACAACGAAGATGGTAATAATTTAGAGAGGAAACCTAGTGGAGAAGACAACCATGCTAACGGAAATCATTTTGTTAAGCCACCCATGTTCCAAAGGGGGGTTCTTCGAACTAATTGTATAGACTGCTTAGATCGCACAAATGTTGCACAATATGCATATGGGTTGGCTGCTCTTGGCCACCAGCTTCATGCTCTGGGAATTATTGACCACCTGAAAATTGACCTTGAGGATCCTGTAAGTGATGATTTGATGGGATTTTATGAGCGGATGGGTGACACTCTTGCACATCAGTATGGTGGTTCTGCTGCACACAACAAGATATTCTCTGAGAGGAGGGGACAATGGAAAGCTGCAACACAATCCCAGGAGTTCTTTAGGACTCTTCAACGATATTACAGCAATGCTTACATGGATGCTGAGAAGCAAAATGCAATTAACATTCTTCCTTTTTCTTGGCACAGATTCCTGGGACATTTTCAGCCACAAGTGGGTAAGCCTGCTCTATGGGATTTGGGCTCAGATCAACATTACGATATAGGGAGACATGGGGATGATGATGCAAGGGCATTTGTCAAAAGGTGTTTCTCGGATGGAAGCATCATTCATGGCAGGTCCTCACCCACGTCAGCCTCAAATTCAAATATTGAAAAATTCTCAAAGCTAGGTTTGCAGAACCGATCAGAAGAAGGAAACAATGATTTTTGTGACTCATTGCCTGAAATATCAACATTTGAGAGTGACATGGCATTTTCAAGGTACACTCCCTCATTGCCTCGACGACAGCTTTTTGTAGACGCACCAAGAGAGCGGTACCTTGATAGTGAACATATTTCACATTCTGCACATGAGGTTTCATTCAGCAGTTCCAACTTTGTTGACCTGGATTGGCTGTCTTCTTCAGGAAATTCTTGTGAAGAAGAGCCATTTGAAAGGTTTTCAATTGCCAATTCTTCTATTGCTGGGAATTCTTCAGAAAATGTTATCAATGGAGTTATTATAGGAGGAGATGCTCCCTCCAGCAGCGTTTTAGACTCAAACACTAAGGGAAGAGAGCGAACTGGGTCAGAGTTATCCTACCGTGATGCCCAGTCCAAAGTTCTAGAGGAATATCCTGATACTTTTGTACAATGGGTGAATAATGGACAGACACTTTGCAATTGA 2523 0.4114 MASSENEPSSHSSPPPPPANICLQKFRLYETLSNFYMIGRDNSRTYWKVLKIDRLDPSELTVLEDSTTYTERECSDLLRRIHEGNRSTGGLKFVTTCYGIVGFIKFLGPYYMVVITKRRKIGAICGHTVYAVSKSETIPLQNPSVQSNIDENRYRKLLLTVDLTKDFYFSYSYYIMRSLQRNLCDSETGHVLYENMFVWNEFLTRGIRNHLQNTIWTVALVYGFFKQETLAISGREFILTLIARRSRHYAGTRYLRRGLNDKGRVANDVETEQIVFEDVPEGLPVQICSVVQNRGSIPLFWSQETSRLNLKPDIILSKKDQNYQATKLHFENLVKRYGNPIIILNLIKSHERKPRESILRSEFGNAINFINKDLSEENRLRFLHWDLKHFQSKATNVLLLLGKVATYALTLTGFLYCQVSPTPRLEECIERPPINFVYDNIDKGSFQPTRHVDVDNEDGNNLERKPSGEDNHANGNHFVKPPMFQRGVLRTNCIDCLDRTNVAQYAYGLAALGHQLHALGIIDHLKIDLEDPVSDDLMGFYERMGDTLAHQYGGSAAHNKIFSERRGQWKAATQSQEFFRTLQRYYSNAYMDAEKQNAINILPFSWHRFLGHFQPQVGKPALWDLGSDQHYDIGRHGDDDARAFVKRCFSDGSIIHGRSSPTSASNSNIEKFSKLGLQNRSEEGNNDFCDSLPEISTFESDMAFSRYTPSLPRRQLFVDAPRERYLDSEHISHSAHEVSFSSSNFVDLDWLSSSGNSCEEEPFERFSIANSSIAGNSSENVINGVIIGGDAPSSSVLDSNTKGRERTGSELSYRDAQSKVLEEYPDTFVQWVNNGQTLCN* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0226 840 Pfam SacI homology domain 98 389 IPR002013 GO:0016791
Vra5g0226 840 ProSiteProfiles Sac phosphatase domain profile. 158 554 IPR002013 GO:0016791
Vra5g0226 840 PANTHER PHOSPHOINOSITIDE PHOSPHATASE SAC3-RELATED 3 839 - -
Vra5g0226 840 MobiDBLite consensus disorder prediction 793 813 - -
Vra5g0226 840 MobiDBLite consensus disorder prediction 448 477 - -
Vra5g0226 840 MobiDBLite consensus disorder prediction 448 471 - -
Vra5g0226 840 PANTHER POLYPHOSPHOINOSITIDE PHOSPHATASE 3 839 IPR043573 GO:0043813|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0226 Vra-Chr5 1970140 1984218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0226 23 840 Acyl Lipid Metabolism Gene Families AT3G43220 59.879 0.0 944
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0226 K22913 - gmx:100786438 1405.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0226 5 1970140 1984218 Vra5g0226 5 1970140 1984218 ECH
Vra7g2659 7 46855380 46865764 Vra5g0226 5 1970140 1984218 PCT