Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0156 ATGAAGGAGGATACTGAGCTTGAGGAAGGAGAGGCTTTCTATTACAAGGATGACGATGAAGACAACATTGACCCTGATTCTTTCTCATACATTGATGAGAAGATTCAGCATGTTCTTGGCCATTTTCAAAAGGAATTTGAAGGTGGTGTATCTGCTGAGAATCTGGGTGCAAAATTTGGTGGTTATGGTTCCTTTTTACCTACCCAAGAGCGCTCCCCTCGTCTATTGTCTCATCCAAGAACTCCACAAAGAAACCACAGCTCACCAAAGTTTAATAACAATCCTCACATGGAGGCTGTGTCTCATAACAGAAAAGCACCTACAAATGTGCCTCATCCTTCAAGGATTGAAAATGCTTCTCATAGTTCACATTTATTTCGTGATTTAAGAGAAGCTTCAGCAAATGATTCAGTGAAGAAAGAAGAAGGAATTTCTTCCTGTGATCAGGCTGAGAGGTGCACTTTGAAGGATGATACTACAAAAAATACAGAGAATTCAACTGATCAAAGGACACTGAAGTTGCGAATAAAAATGAAATCTAATATCTTAGCACAAAAGAATGCAGAAATTTATAGTGGCCTTGGACTTGATGACTCTCCCTCATCTTCAATGGATAACAGCCCTGTGGAAAGTGAAGGCATGCCACCTGTATCTCAAGAGAGTGATGCAGATTCTCCAACCGGCATGATTCAGGTTATGAGTTATTTTCCTATCCCTGGCGGTGTTCTGATATCTCCTCTACATGAAAGTGTGCTCAACCTGATAAAAAATGATAATAAAGCTAATGGAGACAGCAGGTTTTCGTACCCTCTTAATGGTCATCAAGATTCTCTTAATGAACCAGATTCTTTTGTGCGGGCTGGACATTTGAAGAAGAACACAGTGAGAATGGCGAGACAAAGTGAAAAGCAGTTGGAATTGAAGCATCCGAATGGTACCCTTTCCGAGAAGGAAACTACATTGCATAAAAAGAAAAAAATAGGAAATAGAACACCGGATTGTAAAGATTTCCTGCCTAATGAATTGAAATGGACACCTCTGTCAAGCTCAATTTGTGATGCTGGTGAATTTGCTGAAGTCACTGCTAAAGCTTCTAAAGCCTCCAAGGAGGTTAATGAGAATGGGGTGCTGGGCAGAATGGCTTCTGAAGAAGCATTGAAGGAAGAGTCGTTAGAATCGATATCTGGTCAAGATTTTGGGAAGACTGTGAAACAAAATGTAGGAAATGGTTTTCTGAAAAAGGCTCCAGAACATAATCTGGAAAGTTCCCACAAGGATAATTCTACAGACCCTATGAATAATAACTCAAGTAATACTTCCATTATTTCCAATAAGGTTGAACGTGAGGTACTAAAATGTAAGGCAGATCATAAGTCTGAGACCCGTCAGAAAATAAAGGCTGTGTCTGAGCGGAAGAATAAGTCGAAAGGTAATCAGAGTCCTGGAAAAGCTAAGGCAATTGCAAGAAAGAAAAGCTTTGGTGGTACTAATAATGCAATGGTAATTGAGAAAGGGAGTACTGGCTTTGACAGTACTTGTATAAATAAAATGAAGTCAAGGTCTCTGTTGGACAAAAATTTCAGTGATGGTAACAGGGATTCAATGAAAGAAAAAAGATCAGAACGGAAAGTTGACAGTCTTGCTGGAAATGGTGAAATAAAAAATGCAAAAATTAGTAATGGAAAACAGAGTGCATTTGGGATTAAAGCAAAGGAGAGAATGAGTGGCCATAAAGTTGTCAAGCAGGTGCTAGCTGGGCCATGCATTAATGATACTTCGGCTTCATGTCCTATAGCTGAAAACAACGTTGCACCTGAGATGATTTCATCAGCAGTAGCTGTACCTCAACTTATTGAAGAAGATTGGGTATGTTGTGACAGTTGCCAGAAATGGCGGCTCCTACCTACTGGTATGAAGCCTGAGCACCTTCCAGAGAAATGGCTGTGTAGCATGCTAAATTGGCTGCCTGGGATGAATTCTTGTGAGTTCAGTGAGGATGAGACAACAAAAGCACTTTATGCGTTATATCAAATGCCAATTTCCCAGGTTCAAAATAACATGCAAAGCCATGGCACTGAAACTGCGATTGGAGTTAGCTCTCCAAATTCTTTACAGTATGGCCTAAATCAAAATATGTCTAGTTCTGATATGTCTGACCGAGGAAGGAAGAAACTTGTTATTAAGGAAAAGACAATGTCTGGAATTAATAATGACATGCATCGGTTCTCAAATTCAGTGAAGGCCAATGTTCAAGTATCTGGAAAAAATAGAAGCTTGAACGGCTTGAATCAGCATCCTGCTGACTTAAACCCAGTGAAGAAGATGACAAACTCTTCTAAACATCTTAGTAGGCCTGACAACATGATAGAAGAGAAACATGTGCCTAAAGAGAATGAAAAGCAAGTGAATGGAGGTGATAGAAAGCATGTTAAGTTGAAACGGAAGGTGGATGCTGAACAATATAAATCGGGACCTCCGAAGAAATTAAAAACTGAAAATGTTTTCTCTGCCAATATTCAATCAAATTCTGACATGAACCTTGAGAAGGTGTCTCTATATTCAAGAAATGGTTTGCCAACAAAAGCTAGTGGGAAGGATATGAGAAAGTATGATGAATATTGTTTATCTGAGGATGCATCTGACAGATTACCAGTCACTGTAAAGAAAGAGGGAGATCAAGCTCAGGTCTCATCTGGTTTAATGAAGAAAAGGAAATTGAAGGACCGGCTTGATGATGAAAAGCAGTATGGTGAAGAGGGTGATGCAACAGAATTTGGCAAAGAAAAGAAGTACAGAATTTTAAAGTCAGTAAATGAAGGCGACAATAAATTAAGCAAGGGTGGTATAAGGGAAGTTTGCAGGGCAGGCAATGGGGACCATATGGCTGTTGGCACAGAAGTCAGACTTGGTGACAAACGCAACCAACTAAGGAAGCATAGGAAAAATGTTGCATCTCTTCATGCTTCAGATGGTATTGATCAAGTGCGCAAGGATTTGGACTCTAGACCACATTCATTGGCAGCAACTTCAAGCTCTTCTAAAGTTTCAGGTTCTCATAAAGCTAAAACGAAGCTTGAAGATGTGAGAAGTTCACCTGTTGAATCTGTTACCTCGTCACCTTTGAGGGCCTTCAACTTGGATAAGAATAATTTTGCAGTAGTAGACACTTCAGTGAAAGACAATGTTACAAAAGGTGGACAGTCTGCGGTAGGTTCCAAGAGAAGTGTGGATAACAGGGACAGAAAACTATCAGTAAAATTGAAGGAGGGTAGAATTCCGCATGATTTACATACTACATCCCACAAATTATCTTCCACAGAGAACCAGGTTGAGGATGCTAAAGACAAATGCAGGCTCCAAACTAAAAATCCTTCTGAACTAAAGAATAATCATTTGCTTGAAGGTGGTGTTCATGTTGAACAATCTGGCTATTGTGCCAATGGTGTACATAAAGAGGAGAAAGTAAAGAAGGAAAACCTGGAAAGTGAACTTTCTTGGCAGAAATCTGGTAAGGTTACATCATTGAACAGCAAGGAGAAAGGCAAAAAAATTTCTTCTCATGTTTGTACCGATAACATAAAGACATCAGTTTCAGAGACTGTCCATTCAAAAAAAGGTGGGAGGTATGATTCAGCAGCTGATCCCAGTAACCATGCATCTGATGCTGAGACAAAAAATGTTGTTAAATATACTTTACCCAAGTCTAAGAGTGAAATTGAGATTACTAGTCAGAAAAGTGCTTTAATACAAGGGCCAAATGAAACTGGAAAGCAAACTGAGATAAAACCAAGAGACTTTGAGAAATCAGCTCCAGAGATTGATGTTCAACGTGGCAATGAGAGAAAGGCTATCACCCGGCAAGACTCAACTCACGATTTTGAGGAAGAAAACAAAGCTAATCATGTAATCACAGAATCAAGAGTTGGGAAATCGAAAGTTCTCTCATCTGCAGCAGGTGAACTTAAAAGGGAAGCATTGAATATGGGTTCTAGAACTGTACCTCAGTATCAAAAGGGAGGAATGGCTAATGAGCATCCCGTCAATGTTTCCGACAATGGTGATTTGGTCAAGTCTATGAGGAATTTTGCTGATATTAGTAACAATGCTGGAGTTAATTGTAGCTCTGGAAATTCCCTGCCTGATCAGCAACCCTCTTTTTCAAGTCCTCTGAGAACAAATTTTAACCAAACTACTGTTGACACCCTGGAAGAAGCCACAAAACTAAAAGATAGAGCAGATAATTATAAGAACTCTGGGTTTGACTTTGAAAGCAACGAGACATACTTTCAAGCTGGGTTGAAGTTTTTGCATGGAGCATCTATTTTAGAAAATTGTCACAATGACAGTAGCAAACTTGGGGAAATGAGTCAAATGCAAATTTATGCTACTGCGGCCAAACTTTTCAAATGTTGTGCCCTTGAATATGAAGCTCGTCAAGAAATGGCTGCTGCTGCTTTGGCATATAAATGCATGGAGGTGGCATACATGAGAGTGGTCTACTGTAAGAATTCCAGTACTAACAGAGATCGACATGAGTTACAATCAACTCTTCACTTGGCTTCTCAAGGCGAATCTCCTTCATCTTCTGCATCCGATGTTGATAACCTGAACAATCAGGCAGCAGCAGATAGGGCTACTTTGCCTAGGGGTACCAATAGTCATGTTGCTATCAACCACGTCATATCTGCGCGAACTCGTCCAAGTTTAATCAGGCTTCTTGATTTTACTAAGGACATACATTTGTCAATGGAGGCTTCTAGGAAATGTCAGAGCACTTTTGCGGCTGCTAGTGTGATCCTGGAAGAATCAAGGAATAAGGACTGTATAGCTTCTATTCGGAGTGTTGTTGATTTCAGCTTCCAGGATGTAGACGAGCTTGTACGTCTTGTTTGGACAGCATCAAAAGCAATAAGCCGCGCTGGTCTTGGTGGTGCTAGAGATTAA 4944 0.4005 MKEDTELEEGEAFYYKDDDEDNIDPDSFSYIDEKIQHVLGHFQKEFEGGVSAENLGAKFGGYGSFLPTQERSPRLLSHPRTPQRNHSSPKFNNNPHMEAVSHNRKAPTNVPHPSRIENASHSSHLFRDLREASANDSVKKEEGISSCDQAERCTLKDDTTKNTENSTDQRTLKLRIKMKSNILAQKNAEIYSGLGLDDSPSSSMDNSPVESEGMPPVSQESDADSPTGMIQVMSYFPIPGGVLISPLHESVLNLIKNDNKANGDSRFSYPLNGHQDSLNEPDSFVRAGHLKKNTVRMARQSEKQLELKHPNGTLSEKETTLHKKKKIGNRTPDCKDFLPNELKWTPLSSSICDAGEFAEVTAKASKASKEVNENGVLGRMASEEALKEESLESISGQDFGKTVKQNVGNGFLKKAPEHNLESSHKDNSTDPMNNNSSNTSIISNKVEREVLKCKADHKSETRQKIKAVSERKNKSKGNQSPGKAKAIARKKSFGGTNNAMVIEKGSTGFDSTCINKMKSRSLLDKNFSDGNRDSMKEKRSERKVDSLAGNGEIKNAKISNGKQSAFGIKAKERMSGHKVVKQVLAGPCINDTSASCPIAENNVAPEMISSAVAVPQLIEEDWVCCDSCQKWRLLPTGMKPEHLPEKWLCSMLNWLPGMNSCEFSEDETTKALYALYQMPISQVQNNMQSHGTETAIGVSSPNSLQYGLNQNMSSSDMSDRGRKKLVIKEKTMSGINNDMHRFSNSVKANVQVSGKNRSLNGLNQHPADLNPVKKMTNSSKHLSRPDNMIEEKHVPKENEKQVNGGDRKHVKLKRKVDAEQYKSGPPKKLKTENVFSANIQSNSDMNLEKVSLYSRNGLPTKASGKDMRKYDEYCLSEDASDRLPVTVKKEGDQAQVSSGLMKKRKLKDRLDDEKQYGEEGDATEFGKEKKYRILKSVNEGDNKLSKGGIREVCRAGNGDHMAVGTEVRLGDKRNQLRKHRKNVASLHASDGIDQVRKDLDSRPHSLAATSSSSKVSGSHKAKTKLEDVRSSPVESVTSSPLRAFNLDKNNFAVVDTSVKDNVTKGGQSAVGSKRSVDNRDRKLSVKLKEGRIPHDLHTTSHKLSSTENQVEDAKDKCRLQTKNPSELKNNHLLEGGVHVEQSGYCANGVHKEEKVKKENLESELSWQKSGKVTSLNSKEKGKKISSHVCTDNIKTSVSETVHSKKGGRYDSAADPSNHASDAETKNVVKYTLPKSKSEIEITSQKSALIQGPNETGKQTEIKPRDFEKSAPEIDVQRGNERKAITRQDSTHDFEEENKANHVITESRVGKSKVLSSAAGELKREALNMGSRTVPQYQKGGMANEHPVNVSDNGDLVKSMRNFADISNNAGVNCSSGNSLPDQQPSFSSPLRTNFNQTTVDTLEEATKLKDRADNYKNSGFDFESNETYFQAGLKFLHGASILENCHNDSSKLGEMSQMQIYATAAKLFKCCALEYEARQEMAAAALAYKCMEVAYMRVVYCKNSSTNRDRHELQSTLHLASQGESPSSSASDVDNLNNQAAADRATLPRGTNSHVAINHVISARTRPSLIRLLDFTKDIHLSMEASRKCQSTFAAASVILEESRNKDCIASIRSVVDFSFQDVDELVRLVWTASKAISRAGLGGARD* 1648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0156 1647 PANTHER CW-TYPE ZINC-FINGER PROTEIN 1 1642 - -
Vra5g0156 1647 Pfam CW-type Zinc Finger 622 667 IPR011124 GO:0008270
Vra5g0156 1647 MobiDBLite consensus disorder prediction 1002 1036 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 414 440 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 784 810 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 1198 1224 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 194 225 - -
Vra5g0156 1647 PANTHER CW-TYPE ZINC FINGER 1 1642 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 1267 1294 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 455 477 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 426 440 - -
Vra5g0156 1647 Coils Coil 1096 1123 - -
Vra5g0156 1647 Gene3D - 616 671 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 196 225 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 66 124 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 525 544 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 756 810 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 756 783 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 1004 1018 - -
Vra5g0156 1647 ProSiteProfiles Zinc finger CW-type profile. 616 669 IPR011124 GO:0008270
Vra5g0156 1647 MobiDBLite consensus disorder prediction 70 99 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 455 486 - -
Vra5g0156 1647 MobiDBLite consensus disorder prediction 1373 1393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0156 Vra-Chr5 1250150 1258954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0156 - - vra:106762170 3204.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2866 7 48800210 48808706 Vra5g0156 5 1250150 1258954 PCT