Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0140 ATGCCCCACATTCATTTCTCTTTCTCTTCTTCCAACTCTTCAATCCTTTCAATCCTTCAATCCTTCAATTCAAGTTTCAACCACTACTTCCACTTCCCTCTCTCAATGGATGCAAAACCTCCTCAACTTGCTGCACAACCTTTAAACTATCAGACATGGTTCTTGAAAGTTTCAATCCACTGTGAAGGTTGCAGGAGGAAAGTAAAGAAAGTTCTGAAGAGCATTGATGGTGTTTTCACTGCAACAATAGACCCACAGCAGAACAAAGTAACAGTCACTGGAAGTGTGGCTGTGGAGACCCTTCTCAGGAAGCTCGTCAGAGCCGGAAAACAAGCCGAGATTTGGCCGGAGAATGACGGAAAAATCTCCGGAAATGGGCGGCAGCAGCAGAAGAAGAAGAAAAATGAAGCAAGAGAACCACAGAGCGGAACTGAAAATGCTTCTGCCAAGTGTAACAGTGAGAAGAAAAGCAGCAGCATTGACTCGCCGGGAAAGTCGCCCTCCGTTTACCGGACGCCGTCGGAGGGTGGTCGGAGCGAAGGTGGTGCCGGCTCTGCTAAGAAGAAGAAGAAGAAATTGCACAGTGGTGGTGGGAATGGAAACAGTGGTTTGAGTTCAGTGGAAGCAGCTACTGGTGCACCTGCACACACCGGATTGCAGTTTCAAGATCTTGTGGGCCCAGTGAATGTGAACCCCACACGTCAGTATTCGCTTTTATATCCAGAAAGTGGTGTTGCAGCTTATAACAGATTGTATCCTTCTTACTACGTTCCATCTTCACCCTACACGTGGGCTGGTCTAGACCAAGATTACCATCACTTTCAATCACCACCGTTGGTTTCCTTTGAGATCTTCAGTGATGAAAATGTTAATGGGTGTTCTGTTATGTGA 891 0.4658 MPHIHFSFSSSNSSILSILQSFNSSFNHYFHFPLSMDAKPPQLAAQPLNYQTWFLKVSIHCEGCRRKVKKVLKSIDGVFTATIDPQQNKVTVTGSVAVETLLRKLVRAGKQAEIWPENDGKISGNGRQQQKKKKNEAREPQSGTENASAKCNSEKKSSSIDSPGKSPSVYRTPSEGGRSEGGAGSAKKKKKKLHSGGGNGNSGLSSVEAATGAPAHTGLQFQDLVGPVNVNPTRQYSLLYPESGVAAYNRLYPSYYVPSSPYTWAGLDQDYHHFQSPPLVSFEIFSDENVNGCSVM* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0140 296 MobiDBLite consensus disorder prediction 116 208 - -
Vra5g0140 296 ProSiteProfiles Heavy-metal-associated domain profile. 58 114 IPR006121 GO:0046872
Vra5g0140 296 CDD HMA 55 113 IPR006121 GO:0046872
Vra5g0140 296 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 142 296 - -
Vra5g0140 296 PANTHER HEAVY-METAL-ASSOCIATED DOMAIN PROTEIN 45 147 - -
Vra5g0140 296 Pfam Heavy-metal-associated domain 57 108 IPR006121 GO:0046872
Vra5g0140 296 Gene3D - 49 114 - -
Vra5g0140 296 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 45 147 - -
Vra5g0140 296 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 142 296 - -
Vra5g0140 296 SUPERFAMILY HMA, heavy metal-associated domain 49 116 IPR036163 GO:0046872
Vra5g0140 296 MobiDBLite consensus disorder prediction 141 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0140 Vra-Chr5 1145972 1148213 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0140 - - vra:106761779 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0140 5 1145972 1148213 Vra5g0140 5 1145972 1148213 ECH
Vra7g2851 7 48657867 48659490 Vra5g0140 5 1145972 1148213 PCT