Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0101 ATGGGGGCACTCACTTTCACAGAGGAGTTTACTAGCACTGTCCAGCCAGGAAGGTTGTTCAAGGCTTTGATCCTTGATGCTCCAAACCTCATTCCCAAACTGATGCCTGAGGCCATTAAGAATGTTCAATTGGTTGAAGGGAATGGAGGTCCTGGAAGCATTCAGGAGATAACCATTGCTGAAGGTGATAAGATCAAACACTTGAAGCATAGAATTGATGCAATTGACCCTGAGAAATTGACTTACAGCTACGCAGTGATTGAGGGGGATGGTGCACTGGAAAAAGTGGATTCAATTTCACATGAGATTAAGTTCGAGGCCACTGAAGAGGGAGGTTCCAAGACCAAGAATGTCAGCACTTATCAGCCCAAAGCAGGGGTTGATGTCAAAGAGGAGGATTTCAAGGCTGCAAAGGAAGAAGGCTTGGCTCTCCTCAAGGCAGTGGATGCTTATCTTGTGGCAAACCCAGAGGCCTATGCGGGAGGAACAACTTTTACATATGATTATTCCTCCGCTGTTGCTCCATCACGCATGTTCAAGGCCTTGATCACTGACTCAAGAACTTTGCTTCCAAAGCTCTTACCACAGTTCATAAAAGAGGTCAACGTGATCCAAGGAGATGGAGAAGCTGGAAGCATTGAGCAAGTTAACTTTTCTGAAGCTAGCCCCTTCAAATATGTGAAATACAGGATTGATGAGGTTGATAAGGAGAAATTAGAGTGCAAATACGCTATGATTGAAGGGGGTCCATTGGGGGAAAAGCTTGAGTCCATAGCTTATGAGGTCAAATTTGAGGCCACAAGTGATGGTGGTTGCCTCTGTAAAATGACAAGCAAATACAATGTCATAGGGGATTTTGAAGTCAAAGAAGAAGAGATAAAGGAAGGAAGAGAAAGCTCTCTTGGAGTCTGTAAAGTGGTGGAAGCCTATCTGCTTCAGAATCCACAAGTCTATGCTTAA 960 0.4437 MGALTFTEEFTSTVQPGRLFKALILDAPNLIPKLMPEAIKNVQLVEGNGGPGSIQEITIAEGDKIKHLKHRIDAIDPEKLTYSYAVIEGDGALEKVDSISHEIKFEATEEGGSKTKNVSTYQPKAGVDVKEEDFKAAKEEGLALLKAVDAYLVANPEAYAGGTTFTYDYSSAVAPSRMFKALITDSRTLLPKLLPQFIKEVNVIQGDGEAGSIEQVNFSEASPFKYVKYRIDEVDKEKLECKYAMIEGGPLGEKLESIAYEVKFEATSDGGCLCKMTSKYNVIGDFEVKEEEIKEGRESSLGVCKVVEAYLLQNPQVYA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0101 319 CDD Bet_v1-like 164 311 - -
Vra5g0101 319 CDD Bet_v1-like 5 152 - -
Vra5g0101 319 PANTHER - 163 319 - -
Vra5g0101 319 PANTHER - 1 160 - -
Vra5g0101 319 SUPERFAMILY Bet v1-like 4 159 - -
Vra5g0101 319 SUPERFAMILY Bet v1-like 164 318 - -
Vra5g0101 319 Gene3D - 161 319 IPR023393 -
Vra5g0101 319 Gene3D - 2 158 IPR023393 -
Vra5g0101 319 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 160 - -
Vra5g0101 319 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 163 319 - -
Vra5g0101 319 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 248 280 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0101 319 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Vra5g0101 319 Pfam Pathogenesis-related protein Bet v 1 family 163 314 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0101 Vra-Chr5 799958 803881 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0101 - - vun:114162549 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0101 5 799958 803881 Vra5g0101 5 799958 803881 ECH
Vra5g0101 5 799958 803881 Vra7g2807 7 48304527 48305581 PCT