Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0096 ATGGGTGTTTTTGCTTTCGATGATGAGAACTCCTCTACACTGCCTCCAGCAATATTGTACAAAGCTCTAACAAAAGATTCAGACAGCATCATCCCAAAGGTTATTCCTGTCATCCAGAGCATTGAAATTGTTGAAGGAAATGGTGGACCTGGAACCATCAAGAAGCTAACAGCTATTGAAGGTAGCGAAACCAGTTTTGTGCTGCAGAAAATCGATGCAGTGGACGAAGCTAACCTGGGATTCGATTACAGCATAGTGGGAGGACCAGGGTTGCATGAAAGTTTGGAGAAAATCACACTTCAGACAAAGGTTTTGCCTGGTCCTGATGGTGGTTCCATCTCCAAGGTCGCTGTCAAATACCACACCAAAGGCGATGCACCTCTCTTAGAAGCAGTGCTTGAAGAATCAAAGGCCAGGGGAACTGGTTTTTTCAAGGCTGTCGAGGGTTACGTTTTGGCAAACCCTGGAGAATACTGA 477 0.4549 MGVFAFDDENSSTLPPAILYKALTKDSDSIIPKVIPVIQSIEIVEGNGGPGTIKKLTAIEGSETSFVLQKIDAVDEANLGFDYSIVGGPGLHESLEKITLQTKVLPGPDGGSISKVAVKYHTKGDAPLLEAVLEESKARGTGFFKAVEGYVLANPGEY* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0096 158 Gene3D - 2 157 IPR023393 -
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 Pfam Pathogenesis-related protein Bet v 1 family 2 153 IPR000916 GO:0006952
Vra5g0096 158 PANTHER - 1 155 - -
Vra5g0096 158 CDD Bet_v1-like 6 151 - -
Vra5g0096 158 PANTHER ABA-RESPONSIVE PROTEIN 1 155 - -
Vra5g0096 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Vra5g0096 158 SUPERFAMILY Bet v1-like 5 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0096 Vra-Chr5 784953 786169 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0096 - - gmx:100305867 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2806 7 48291052 48291927 Vra5g0096 5 784953 786169 PCT
Vra5g0096 5 784953 786169 Vra7g2803 7 48276401 48287897 PCT