Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0020 ATGGCAACTTCAAAATCCAGTTTGTGCTTCCTAGTTTTCTTGGTTAGCAATGGAATAACACTCAGCTTTGGTGACACATGCCTGCCAAAAGAAGCTGCGTTATTTGTATTTGGAGATTCAATATTTGATGCTGGAAACAATAATTACATCACTACCACTGCTGATAACTACGCAAATTTCTTTCCATACGGAGAAACCTTCTTCAACTATCCAACAGGCAGATTTTCTGATGGTCGCATCATTCCAGATTTCATAGCTGAGTATGCTAAGTTGCCTCTAATCCAACCCTATCTGTTCCCTGGTAATCAACGATACGTTGATGGAGTCAATTTTGCATCTGCAGGAGCAGGGGCTTTGGTTGAAACCCATCAAGGACTGGTGATAGATCTTAAAACTCAACTAAGTTACTTCAATAGAGTCAGCAAGGTGTTGAGGCAGGAAGTGGGAGATGCAGAAACCACAACCCTGCTGGCCAAAGCTGTCTACTTGATTAACATTGGAAGCAATGATTATGCAATCTACCTCACACAAAAATCTAGTGCCATTACTCCAGAGAAATATGTAAATATGGTAGTTGGTAATCTTTCAACAGTGATAAAGGGGATACACAAGGCAGGAGGGAGGAAATTTGGGGTTCTCAATCAGCCAGCTATGGGTTGTGTTCCATTCGTTAAGGCTCTTATGAATGAAACTAAAGGTTGCGTGGAAGAAGCTTCAGCAGTAGCCCAACTGCATAATAAGATTCTTTCAGTGGAGCTTGACAAGTTAAAGAAACAACTAACAGAATTTAAATATTCATACGTGGATTTCTTTGATTTATCATTAGACCTTATAAGCAACCCTTCAAAATATGGTTTAAAAGAAGGCGATGTGGCATGCTGTGGCAGCGGGCCTTACAATGGATATTTCAGCTGTGGAGGGAAAGGAGCAGTGAAAGATTACAACTTGTGTGCGAATCCTAGCCAGTATGTGTTCTTTGACTCGGTTCATCCCTCTGAAAGGGCTCATCAAATTATTTCCCAGTTCATGTGGAGCGGCAACTCAAGCATAGCAGGCCCTTACAATCTTGAAATTCTATTTCAGTTATAA 1089 0.4086 MATSKSSLCFLVFLVSNGITLSFGDTCLPKEAALFVFGDSIFDAGNNNYITTTADNYANFFPYGETFFNYPTGRFSDGRIIPDFIAEYAKLPLIQPYLFPGNQRYVDGVNFASAGAGALVETHQGLVIDLKTQLSYFNRVSKVLRQEVGDAETTTLLAKAVYLINIGSNDYAIYLTQKSSAITPEKYVNMVVGNLSTVIKGIHKAGGRKFGVLNQPAMGCVPFVKALMNETKGCVEEASAVAQLHNKILSVELDKLKKQLTEFKYSYVDFFDLSLDLISNPSKYGLKEGDVACCGSGPYNGYFSCGGKGAVKDYNLCANPSQYVFFDSVHPSERAHQIISQFMWSGNSSIAGPYNLEILFQL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0020 362 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 34 45 IPR008265 GO:0006629|GO:0016298
Vra5g0020 362 Pfam GDSL-like Lipase/Acylhydrolase 34 341 IPR001087 GO:0016788
Vra5g0020 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 361 IPR044552 -
Vra5g0020 362 CDD SGNH_plant_lipase_like 33 347 IPR035669 -
Vra5g0020 362 Gene3D SGNH hydrolase 30 349 IPR036514 -
Vra5g0020 362 SUPERFAMILY SGNH hydrolase 34 345 - -
Vra5g0020 362 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0020 Vra-Chr5 214039 215621 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0020 28 361 Acyl Lipid Metabolism Gene Families AT4G10950 30.548 4.30e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0020 - - vun:114162500 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0370 9 3118233 3120822 Vra5g0020 5 214039 215621 PCT