LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra4g1241	ATGGCCACCTCGCTCTATTCAACTCATTGTCGTTCACTCGCCACCTCCTCCTCTTCCTCCGCCTCCTTCCAGCCCTCTCCCTTCTCGTCTAATCCCGCTTACCTTCAACGCGTCACCTTCTCGCATCGCTTTCTCGCTTCTAAGGTCTCTCTCAAGTCTCAACCCCCGTCGTATAAGATTCCGGTCCACACCCAGCAACAGGAAGGTGCAGTAGCTGCTTCTGTGACACCTGTTGAAAATGGCACTTCTCACAAGCAGCTGAATGCTGAATTATTGTCTGTTAAGTCCCCAAGGGAGTCTCTGGTTGAAGACGGTTATGAAAAGGACGAAAATGAGTCCACCGTTAGTATTACTGTTGTTGGAGCCTCTGGAGACCTTGCTAAGAAGAAGATATTTCCAGCTCTCTTTGCACTTTACTATGAGGATTGTCTCCCTAAGCACTTCACCATCTATGGTTACGCACGAAGTAAGATGACTGATGCAGAACTGAGAAATATGGTTAGCAGGACCCTCACTTGTAGAATTGATAAGAGAGAGAACTGCAATGAGAAGATGGAGCAATTCCTAAAAAGATGTTTCTATCATTCTGGTCAATATGATTCTCAGGAAAACTTTGCAGTGCTAGACAAGAAGCTGAAGGAACAAGAGGGTGGGAGAACTTCTAATCGCCTGTTTTATCTTTCAATTCCTCCTAATATATTTATAGATGCTGTAAAATGTGCAAGCTTGTCGGCTTCTTCTGGCAATGGTTGGACCAGGGTCATTGTTGAAAAGCCTTTTGGTCGTGATTCTGAATCTTCAGCTGCATTAACAAAATCACTCAAGCAGTATTTGACTGAGGATCAAATTTTCAGGATTGACCACTATCTTGGGAAAGAGCTTGTGGAAAATCTTTCTGTCCTCCGATTCTCAAATCTCATATTTGAGCCATTATGGTCAAGGCAGTATATAAGAAATGTACAGTTGATATTCTCAGAAGATTTTGGGACTGAAGGACGTGGCGGGTATTTTGACCATTATGGTATCATAAGAGACATTATGCAGAATCATTTACTTCAAATACTAGCTCTCTTTGCAATGGAAACTCCTGTTAGTTTGGATGCAGAGGATATAAGAAATGAAAAGGTCAAGGTTCTTCGTTCAATGAGACCCTTGCAACTTGAGGATGTGGTTATAGGCCAGTATAAGAGCCACACAAGAGGAGGTGTTACGTATCCAGCCTATGTTGATGACAAAACTGTACCAGTAGGCAGCTTAACTCCAACATTTGCTGCGGCTGCCCTCTTTATAGATAATGCAAGATGGGACGGGGTACCTTTTCTGATGAAGGCAGGGAAAGCATTACACAGCAAAGGAGCTGAGATCCGGGTACAGTTCAGGCATGTGCCGGGTAATCTGTACAATCGAAATTTTGGTGCAGATCTTGATCGGGCAACCAATGAACTTGTTATCAGAGTTCAGCCTGATGAGGCTATTTATTTGAAGATAAACAACAAAGTTCCAGGTCTGGGAATGAAGTTGGACCGCAGTAATCTAAATCTTCACTATGCAGCAAGATATTCAAAGGAGATTCCAGATGCTTATGAGAGGCTACTGTTGGATGCCATTGAAGGAGAAAGAAGACTCTTCATACGCAGTGATGAACTGGATGCGGCTTGGTCACTCTTTACACCTGTGCTGAAGGAACTAGAAGAGAAGAAGATAATTCCAGAGTACTATCCTTATGGTAGTAGGGGTCCTGTTGGTGCTCACTATCTTGCAGCCAGATACAACGTACGGTGGGGTGACCTTGGTTCAGACATTGACCGCTAA	1812	0.4376	MATSLYSTHCRSLATSSSSSASFQPSPFSSNPAYLQRVTFSHRFLASKVSLKSQPPSYKIPVHTQQQEGAVAASVTPVENGTSHKQLNAELLSVKSPRESLVEDGYEKDENESTVSITVVGASGDLAKKKIFPALFALYYEDCLPKHFTIYGYARSKMTDAELRNMVSRTLTCRIDKRENCNEKMEQFLKRCFYHSGQYDSQENFAVLDKKLKEQEGGRTSNRLFYLSIPPNIFIDAVKCASLSASSGNGWTRVIVEKPFGRDSESSAALTKSLKQYLTEDQIFRIDHYLGKELVENLSVLRFSNLIFEPLWSRQYIRNVQLIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLQLEDVVIGQYKSHTRGGVTYPAYVDDKTVPVGSLTPTFAAAALFIDNARWDGVPFLMKAGKALHSKGAEIRVQFRHVPGNLYNRNFGADLDRATNELVIRVQPDEAIYLKINNKVPGLGMKLDRSNLNLHYAARYSKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSLFTPVLKELEEKKIIPEYYPYGSRGPVGAHYLAARYNVRWGDLGSDIDR*	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra4g1241	603	Gene3D	-	111	285	-	-
	Vra4g1241	603	ProSitePatterns	Glucose-6-phosphate dehydrogenase active site.	287	293	IPR019796	GO:0004345\|GO:0006006
	Vra4g1241	603	Gene3D	Dihydrodipicolinate Reductase; domain 2	286	595	-	-
	Vra4g1241	603	PRINTS	Glucose-6-phosphate dehydrogenase signature	253	266	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PRINTS	Glucose-6-phosphate dehydrogenase signature	277	305	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PRINTS	Glucose-6-phosphate dehydrogenase signature	329	346	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PRINTS	Glucose-6-phosphate dehydrogenase signature	347	363	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PRINTS	Glucose-6-phosphate dehydrogenase signature	434	460	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	Pfam	Glucose-6-phosphate dehydrogenase, C-terminal domain	300	594	IPR022675	GO:0004345\|GO:0006006\|GO:0050661
	Vra4g1241	603	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	113	300	IPR036291	-
	Vra4g1241	603	Hamap	Glucose-6-phosphate 1-dehydrogenase [zwf].	114	596	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD	31	600	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	Pfam	Glucose-6-phosphate dehydrogenase, NAD binding domain	119	297	IPR022674	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	TIGRFAM	zwf: glucose-6-phosphate dehydrogenase	115	595	IPR001282	GO:0006006\|GO:0016614\|GO:0050661
	Vra4g1241	603	PANTHER	GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE 2, CHLOROPLASTIC	31	600	-	-
	Vra4g1241	603	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	287	594	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra4g1241	Vra-Chr4	19396325	19401015	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra4g1241	K00036		-	gmx:100793694	1103.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra4g1241	4	19396325	19401015	Vra4g1241	4	19396325	19401015	ECH
	Vra4g1241	4	19396325	19401015	Vra1g1067	1	12903666	12910438	PCT