Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0956 ATGCCTCAGTTACGATCATCGTCGTCAATGTCACCACCATTGACATCATTGACCAACAAAGTTGGAAAGAGATGGAAGGAATACCAAGGAATGAACAATTGGAACGGTTTGTTAGACCCCTTGGACGAGAACCTTCGCGCCGAGATTCTCCGCTATGGCCAATTTGTTGAGGCCGCTTATAAGTCCTTCGAATTCGACCCTTCTTCCCCTAACTACGCCAGATGCAAGTTCCCAAAAAGCAAACACTTGGAAAGGTGCGGATTACACAACACCGGTTACAAGGTAACCAAGCACCTACGTGCAACCTCGGGGATCAAACTACCTACCTGGGTGGACAAAGCTCCGAGTTGGGTGGCAACACAATCAAGCTACATTGGGTACGTAGCAGTGTGTCACAACAAAGAGGAGATCAAACGACTGGGTCGAAGAGACATTGTTGTCGCATTCAGAGGTACCACCACATGTCTTGAGTGGCTCGAAAATCTTCGAGCCACTCTGAATAACGTGGTTCAATCTACCGCAAATGGGATTACGTCGGCAGAGCCATGCAGTGTGGAAGAAAATGGAGCTATGGTGGAAAGTGGGTTTCTGAGTTTGTACACGTCAAAGCTGAGTGACAACCCTTCGTTTATGAGCTTGCAAGATATGGTGAGAAAAGAGATTGCCCGAATCCTTAAAACTTACGAAGGAGAAAACTTGAGTTTGACCATTACTGGGCATAGTTTGGGGGCGGCATTGGCAACCCTAACCGCGTATGACATAAGAAACAGTTTTCTCCGGCCACCGCATGTGACGGTGATCTCCTTCGGCGGCCCCCGCATCGGCAACCGGAGCTTTCGTCGGCGGCTGGAGGAGCAAGGGACTAAGGTGTTGCGGATAGTGAACTCGGATGATGTTATAACCAAGATACCAGGATTTGTGTTTGATGAGGTGGACAAAAAGGAAGGTGACGTGGAGGAAAATGGAGGTGAACAAGTGGCTAGTTTTCAGAGATGGATGCGTAGGCGCGTGGAAGAGATTCAGTGGCTGTTGTACTCGGAGATCGGGGAGGAGCTTCGGCTTTGTAGCAGGGATTCTCCATACCTTAGAGGAATTAACATTGTAACTTGTCACGATTTGAACATCTATCTGCATCTTGTTGACGGCTTTGTCAGTTCTACATGTCCCTTTAGAGCCACTGCTAAGAGGTTTCTCCGCCATTAA 1203 0.483 MPQLRSSSSMSPPLTSLTNKVGKRWKEYQGMNNWNGLLDPLDENLRAEILRYGQFVEAAYKSFEFDPSSPNYARCKFPKSKHLERCGLHNTGYKVTKHLRATSGIKLPTWVDKAPSWVATQSSYIGYVAVCHNKEEIKRLGRRDIVVAFRGTTTCLEWLENLRATLNNVVQSTANGITSAEPCSVEENGAMVESGFLSLYTSKLSDNPSFMSLQDMVRKEIARILKTYEGENLSLTITGHSLGAALATLTAYDIRNSFLRPPHVTVISFGGPRIGNRSFRRRLEEQGTKVLRIVNSDDVITKIPGFVFDEVDKKEGDVEENGGEQVASFQRWMRRRVEEIQWLLYSEIGEELRLCSRDSPYLRGINIVTCHDLNIYLHLVDGFVSSTCPFRATAKRFLRH* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0956 400 CDD Lipase_3 120 309 - -
Vra4g0956 400 Gene3D alpha/beta hydrolase 24 399 IPR029058 -
Vra4g0956 400 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 9 399 - -
Vra4g0956 400 PANTHER PHOSPHOLIPASE A(1) DAD1, CHLOROPLASTIC 9 399 - -
Vra4g0956 400 Pfam Lipase (class 3) 146 306 IPR002921 GO:0006629
Vra4g0956 400 SUPERFAMILY alpha/beta-Hydrolases 46 308 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0956 Vra-Chr4 16632862 16634100 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0956 10 398 Acyl Lipid Metabolism Gene Families AT2G44810 64.359 1.46e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0956 K16818 - gmx:100816744 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0956 4 16632862 16634100 Vra4g0956 4 16632862 16634100 ECH
Vra9g0719 9 8186647 8187891 Vra4g0956 4 16632862 16634100 PCT