Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0899 ATGCTTATGGAAAATCAAAACTTGCTATCACTCTTCATCTTCCTCTTCTTGGGTCATTGGATCCATGTTCAAGCTGCTCCTCCTCACTCTCTCGTCACACAGCTCCCTGGCTTCTACTCCCGTTTCCCATCCAACCACTATTCAGGATATATAAGTATTGATGGAGATTATAAGAGTGGGAAGAACCTGTTCTACTACTTCGTGAGTTCAGAAAGAAGTGCAGAGAAGGACCCAGTGGTGCTATGGCTGAATGGTGGACCTGGGTGTTCAAGCTTCGATGGCTTCGTTTATGAGCATGGACCATTCAACTTTGAGGCTGCAAAATCAAAAGAGAATCTACCCACTTTGCATATCAATCCATACAGCTGGTCAAAGGTTTCTAACATTATATATTTGGATTCTCCTGCTGGTGTTGGACTCTCTTATTCCAAGAACACAAGCAAATATGCTACTGGGGACCTGCAAACTGCGTCTGATACCCATCTTTTTCTCTTAAAGTGGTTCCAGCAATTCCCAGAATTTCAGGCTAATCCATTTTATATTGCTGGAGAGTCTTACGCTGGAGTTTATGTGCCTACTCTGGCTTTTGAAGTTGCTAAAGGAATCCAGAGTGGTACAAAGCCCGTGATCAATTTTAAGGGTTACATAGTTGGAAATGGTGTCACGGACGAAAGATTTGATGGCAATGCTCTCATCCCATTTGTGCATGGGATGGGTCTCATATCAGACAGTATCTACGAGGATTTACAAGCTACATGCAAAGGAAACTACTACGATGCTTACTCTTTGGACGAAAATGATCCGTGTTATAAAAGCATTGTAAAAGTTGATAGGGCCATTGATGGGCTTAACGTGTACAATATACTCGAGCCATGCTACCACTTCCCTGACACAACCAAAGAAAATGGAAGCTTACCAACAAGTTTCAAGCAATTAGGAGTTACTGAGAAGCCTCTTCCAGTGAGGAAGAGAATGTTTGGAAGAGCATGGCCTTTTCGAGCACCAGTCAAACCTGGTCTTGTCACATTATGGCCTGAATTGGCTGAAAAGACTCAAACGAGGCATGTCGCTTGTGTTAATGATGAAGTAGCAAGCGCATGGCTGAACAACGATGCTGTCAGAAAAGCCATTCATGCTGAATCGGAAAGTGTGGCAGGTGCATGGGAATTATGTACAGATAGGATAGAGTACGATCACAATGCTGGAAGCATGATTCCCTACCACAAGAACCTAACCAAGATGGGCTACAAGGCACTTATTTTCAGTGGTGATCATGACATGTGTGTACCATTTACTGGAAGTGAGGCTTGGACTCGATCTCTGGGATATAAGATCGTGGATGAATGGAGGCCATGGAACTCAAACGACCAAGTTGCTGGGTACTTGCAAGAATACGAAAACAATCTGACATTCTTAACAATCAAGGGAGCTGGGCACACCGTGCCGGAATATAAACCACGGGAAGCATTGGAATTCTTCAGCCATTGGTTGGAAGGAAAGACAATATAA 1509 0.4354 MLMENQNLLSLFIFLFLGHWIHVQAAPPHSLVTQLPGFYSRFPSNHYSGYISIDGDYKSGKNLFYYFVSSERSAEKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEAAKSKENLPTLHINPYSWSKVSNIIYLDSPAGVGLSYSKNTSKYATGDLQTASDTHLFLLKWFQQFPEFQANPFYIAGESYAGVYVPTLAFEVAKGIQSGTKPVINFKGYIVGNGVTDERFDGNALIPFVHGMGLISDSIYEDLQATCKGNYYDAYSLDENDPCYKSIVKVDRAIDGLNVYNILEPCYHFPDTTKENGSLPTSFKQLGVTEKPLPVRKRMFGRAWPFRAPVKPGLVTLWPELAEKTQTRHVACVNDEVASAWLNNDAVRKAIHAESESVAGAWELCTDRIEYDHNAGSMIPYHKNLTKMGYKALIFSGDHDMCVPFTGSEAWTRSLGYKIVDEWRPWNSNDQVAGYLQEYENNLTFLTIKGAGHTVPEYKPREALEFFSHWLEGKTI* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0899 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 119 131 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 142 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 PRINTS Carboxypeptidase C serine protease (S10) family signature 469 482 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 PANTHER CARBOXYPEPTIDASE 17 501 - -
Vra4g0899 502 Pfam Serine carboxypeptidase 36 499 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Vra4g0899 502 Gene3D - 355 501 - -
Vra4g0899 502 ProSitePatterns Serine carboxypeptidases, histidine active site. 469 486 IPR033124 GO:0004185
Vra4g0899 502 SUPERFAMILY alpha/beta-Hydrolases 32 500 IPR029058 -
Vra4g0899 502 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 17 501 IPR001563 GO:0004185|GO:0006508
Vra4g0899 502 Gene3D alpha/beta hydrolase 25 323 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0899 Vra-Chr4 16043632 16048571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0899 363 502 Calmodulin-binding Proteins AT2G22960 48.571 4.78e-42 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0899 K16296 - gmx:100790895 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0899 4 16043632 16048571 Vra9g0502 9 5307671 5309941 PCT