Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0550 ATGGCAAAAACAGTTCATATAGCTGTTGTTTCTAGTCCTGGTTTCAGCCATCTTGTCCCTATTGTTGAGTTCGCTAAGCGACTTGTCAAGCTTCACCCAAATTTTCATGTCACCTGTTTCGTTCCCTCACTTGGGTCACCCCCGGAATCCTCCATAGCCTACCTTAAAACTCTTCCTTCAAACATTGACTCCGTCTTTCTTCCTCCAATCAGCAAAGAACAGTTTCCCCAAGGACAATACGTGGGACTCCAAATTCTACTCACCGTTACTCTTTCTCTTCCATCAATACACGAGGTTCTCAAATCCTTGTCATCTAAAGTCCGTTTAACTGCATTGGTGGCCGATGTTTTTGCATTCCAAGTCTTGGAATTTGCAAAGGAGTTCCATGCCTTGTCCTACTATTACTTTCCTGGTTCAGCTATGGCATTATCACTGTTCTTACACATGCCAAAACTTGATGAGGAGGTTTCGGGTGAGTTTAAGGACCAGGTAGAACCTATCAGGTTACCAGGTTGTGTACCACTCTTGGGGGTTGATCTTCCTGCTCCAACCCAAAATCGATCAAGTGAAGCTTACAAGAGTTTTCTTGAACGTGCCAAAGCAATGGTTATAGCTGATGGGATTATCTTCAACACCTTCTTAGAAATGGAACCAGCTGCTATAAGAGCATTAGAAGAATCGGTAAATGGGAAGATCAAATTGTACCCTGTGGGACCCATTACACAGAAAGGGTCAAACAGTGAGGCTAATGAGTGTTTAAGATGGTTGGACAAGCAGCCACCTTGTTCAGTGTTGTATGTTAATTTTGGAAGTGGTGGAACTCTGTCTCAACACCAGATCGACGAGCTAGCTTTGGGTTTGGAATTGAGTGGTCAAAGGTTCTTATGGGTTTTGAGAGCACCAAGTAATTTACCTAGTGCTGCTTACCTTGAGACTGCAGAGGAGGACCCTTTGCAATTCTTACCAAAAGGATTTTTGGAAAGGACAAAGGAAAAAGGTTTGGTTATGGCTTCATGGGCACCTCAGGTTCAGATCCTTGGTCATAGTTCAGTTGGTGGGTTCCTAAGCCATTGTGGATGGAACTCGATTTTGGAGAGTGTGCAAGAGGGGGTGCCTCTAATAACTTGGCCACTGTTTGCAGAGCAGAGGATGAATGCAGTGATGTTAGCAGAAGGATTGAAAGTGGCATTGAGGCCAAGATTTAACGAGGATGGCATAGTGGAAAAGGAGGAAATTGCAAAGGTGATAAAGTGTTTGATGGAAGAAGAAATAGGTGAAGCAATGCGTCAAAGAATGATGACTTTGAAAGGATTCGCTGCTCATGCACTGAAAGATGGTTCTTCAAGACAAACCTTGTTACAGTTGACTAGTGAATGGGAAAATTTGAGTGAGAATTAG 1398 0.4335 MAKTVHIAVVSSPGFSHLVPIVEFAKRLVKLHPNFHVTCFVPSLGSPPESSIAYLKTLPSNIDSVFLPPISKEQFPQGQYVGLQILLTVTLSLPSIHEVLKSLSSKVRLTALVADVFAFQVLEFAKEFHALSYYYFPGSAMALSLFLHMPKLDEEVSGEFKDQVEPIRLPGCVPLLGVDLPAPTQNRSSEAYKSFLERAKAMVIADGIIFNTFLEMEPAAIRALEESVNGKIKLYPVGPITQKGSNSEANECLRWLDKQPPCSVLYVNFGSGGTLSQHQIDELALGLELSGQRFLWVLRAPSNLPSAAYLETAEEDPLQFLPKGFLERTKEKGLVMASWAPQVQILGHSSVGGFLSHCGWNSILESVQEGVPLITWPLFAEQRMNAVMLAEGLKVALRPRFNEDGIVEKEEIAKVIKCLMEEEIGEAMRQRMMTLKGFAAHALKDGSSRQTLLQLTSEWENLSEN* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0550 465 CDD GT1_Gtf-like 6 442 IPR002213 GO:0008194
Vra4g0550 465 Gene3D Glycogen Phosphorylase B; 6 447 - -
Vra4g0550 465 PANTHER GLYCOSYLTRANSFERASE 1 463 - -
Vra4g0550 465 PANTHER UDP-GLYCOSYLTRANSFERASE 72B1 1 463 - -
Vra4g0550 465 ProSitePatterns UDP-glycosyltransferases signature. 339 382 IPR035595 -
Vra4g0550 465 Gene3D Glycogen Phosphorylase B; 250 444 - -
Vra4g0550 465 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 264 397 IPR002213 GO:0008194
Vra4g0550 465 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0550 Vra-Chr4 10494444 10496123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0550 2 460 Glycosyltransferase AT1G01420 47.639 7.87e-152 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0550 K08237 - gmx:100776274 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0776 9 8951532 8953351 Vra4g0550 4 10494444 10496123 PCT