Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0414 ATGGAGGTTGGAAGTGTTCTTCATTTTCTTCAAAACAAAACCATTTTAATCATTGGAGCCACAGGCTTTCTTGCCAAAATTTTTCTGGAGAAGATATTGAGGGTTCAACCCAATGTTAAGAAGATTTATCTTCTTTTGAGAGCCTCAGATGCCAATTCTGCCACTTATCGATTGCACAATGAGATCATAGCGAAGGACTTGTTCATTGTGCTAAAGGAAAAACTGGGTGCAAATTTTAAGTCCTTCATTTCTGAAAAACTGACTCTGGTGCCGGGGGACATTTCCATTGAGGATTTGGGTTTGAAAGATTCAATTCTGAGGGAAGACATCTGCAATCAGACGGATGTTATAGTCAATTTGGCTGCAACTACCAACTTTGATGAAAGGTACGATATAGCTTTGGGTTTAAACACCTTTGGGGTCAAGCATGTCATGAACTTTGCCAAACAGTGTACTAAACTGAAAGTGCTTGTTCATGTATCAACAGCCTACGTATGTGGTGAGAGAGGTGGACTCATTCTAGAGGACCCCTATCACTTTGGTGAAACACTAAATGGAGTGTCTGGCCTAGACATCGATGCAGAAAAGACCATTGTGTGTAACAAATTGGATGAACTAAAAGAACAAGGAGCCACAGAACGTGATGTTAAAATAGCCATGAAGAATCTGGGTATCACCAGGGCAAAGGTGTATGGATGGCCAAACACTTACGTGTTTACAAAGGCAGTTGGAGAAATGCTTGTGGAAAAACTGAAAGGAAACCTATCTGTTGTTATTCTGCGACCTACCATTGTCACAAGCACAATGAAAGAACCTTTTCCTGGTTGGGCTGAGGGTGTCAGAACCATTGATAGTTTAGCTGTTACTTATGGGCAAGGAAAGCTAACATGTTTCCTTGGAGATATCAATGGAGTTGTGGATGTGGTCCCAGCAGACATGGTGGTGAATGCTATGCTAGTGGCCATGGTAGCTCATGCAAAGCAGCCAAGTGATATCATATACCACGTGGGTTCCTCTGTTAGAAATCCAGTCACATACTTGAATCTCCAAGACTTTGGATTAAAATATTTCACTGCAAAACCATGGATAAGAAAGGATGGCACACCAGTCAAAGTTGGCAGAGTAACTGTGCTCACCAGCATGGATAGCTTTCAGAGATATATGTTCATCCGTTACCTCCTTCCATTAAAGGGACTGGAACTGGCGAATGCTGCACTTTGTCAGTATTTTCGGGGAACATATCTTGAGCTGCATAGGAAGATACAAGTTGTGATGCGGATGGTTGAACTTTACAGACCCTACATGTTCTTTAAGGGCCTATTTGATGATATGAACACAGAGAAGTTGAGAATGGCAGCAAAACAAAGTGGGACAGAGACAGATCTGTTTTACTTTGATACAAAAGATATTAATTGGGATGATTACTTTATGAAGACCCATATTCCTGGCATTGTCAAGTACATTTTCAAGTGA 1473 0.4114 MEVGSVLHFLQNKTILIIGATGFLAKIFLEKILRVQPNVKKIYLLLRASDANSATYRLHNEIIAKDLFIVLKEKLGANFKSFISEKLTLVPGDISIEDLGLKDSILREDICNQTDVIVNLAATTNFDERYDIALGLNTFGVKHVMNFAKQCTKLKVLVHVSTAYVCGERGGLILEDPYHFGETLNGVSGLDIDAEKTIVCNKLDELKEQGATERDVKIAMKNLGITRAKVYGWPNTYVFTKAVGEMLVEKLKGNLSVVILRPTIVTSTMKEPFPGWAEGVRTIDSLAVTYGQGKLTCFLGDINGVVDVVPADMVVNAMLVAMVAHAKQPSDIIYHVGSSVRNPVTYLNLQDFGLKYFTAKPWIRKDGTPVKVGRVTVLTSMDSFQRYMFIRYLLPLKGLELANAALCQYFRGTYLELHRKIQVVMRMVELYRPYMFFKGLFDDMNTEKLRMAAKQSGTETDLFYFDTKDINWDDYFMKTHIPGIVKYIFK* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0414 490 CDD FAR-N_SDR_e 13 361 - -
Vra4g0414 490 CDD FAR_C 390 489 IPR033640 -
Vra4g0414 490 Pfam Male sterility protein 18 318 IPR013120 -
Vra4g0414 490 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 337 IPR036291 -
Vra4g0414 490 Gene3D - 8 373 - -
Vra4g0414 490 Pfam Male sterility protein 392 490 IPR033640 -
Vra4g0414 490 PANTHER MALE STERILITY PROTEIN 2-RELATED 2 489 IPR026055 GO:0080019
Vra4g0414 490 PANTHER FATTY ACYL-COA REDUCTASE 2 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0414 Vra-Chr4 7043743 7049689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0414 110 489 Acyl Lipid Metabolism Gene Families AT4G33790 59.211 1.57e-175 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0414 K13356 - gmx:100805776 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0414 4 7043743 7049689 Vra2g0840 2 7791666 7795501 PCT