Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0840 ATGCCTCAGTTCTTCAAGGGAAAGACCATTTTAATCACAGGCACAACGGGCTTCCTAGCAAAAGTTTTCTTGGAAAAGATTTTAAGAACACAGCCAGAAGTTAAAACGCTATATCTTCTTGTACGAGCAGAAAACATGGATTTGGCTGCAAAACGCTTTCAAAATGAGGTGATTCTGACAGATTTATTTAGAGTGTTACGGGACCAATTGGGTGAAGATTTTGATTCTTTCATTTCGAGCAAGATTGTGGTCATACCAGGAGATGTTTCTCTCAATAACTTTGGTCTGAAAGATGAAAAGCTTATGAGTAAGATGTTGGAAGAGATCAACGTTGTTGTGAATTTTGCAGCATCTACTAAATTTGACGAAAGATTTGACATCTCAATGGGTGTAAATACAATGGGTGCCTTACATGTCTTAAACTTCGCAAAGAATTGTCGTCAGATAAAGGCTTTTGTGCATACATCAACTGCATATGTGTGTGGAGAGATTAAGGATAGAAAAACAATTGTGCAAGAGAAACCCTTTGAGATGGGTCAGACCCTGAAAGAGACCTCGAAATTAGACATCACTGCAGAAATGTATTTGTTGAAGAAGAAAATCGATGAACTCCGATCAGAGAATGCTACTGAAAACACAATCAGATATGTAATGAAAGATTACGGAATTGAAAGAGCAAAGTTGTATGGTTGGCCAAACACATACACATTCACAAAAGCAATGGGAGAGATGCAAGTGGTTCATCACAAAGATAATGTTCCACTAATCATTATACGTCCCACCATGGTTACCAGTACCCTTAAGGATCCATTTCCTGGTTGGATTGAAGGCTTAAGAACTCTGGACAGCATAATATGTAGCTATGGTCAAGGGAAAATAACAAGCTTTCTTGGTCATCCCAAGACAATCTTGGATACCATACCTGCGGACATGGTTGTAAATTGTATGATGACAGCAATTGTTGCTTGTTCAAATCAAGCTCAAGAGAATTTCATCTACCACGTTTCTTCATCGTTAAGAAATCCATTCAGAATTGCCGATGTTCGTGATTTCAGCTATCGTTATTTCACTAAATTCTCGATCAGAAACAAAATTGGAAAGCCAATAACAGTTTCCAAGCCAACTTTGATATCAAGTAGGGTTGCTTTCGACATTCTCATGACAGTCCGATATTGTTTGCCACTAAAGGTGTTAAATTTGGTGAACGAAGTGTTTTGTCAATGCTCTCGAGATGTTTACGAGGATAGCTACAAAAGAATCAAAAGGGTGACACGACTAGTTGAACTGTACAAACCATACCTATTTTTTAAGGGCGTCTTCGATGATTCAAACACACAAAACTTACGAAGAGCAACAAGTTATAACATGGAGGTTGATGGATTGGACTTTGACCCTAATAGCATCGATTGGGAAGACTACATGATGAACACACACATTCCTGGTCTTGTAAACTATGCATTGAAATGA 1467 0.3824 MPQFFKGKTILITGTTGFLAKVFLEKILRTQPEVKTLYLLVRAENMDLAAKRFQNEVILTDLFRVLRDQLGEDFDSFISSKIVVIPGDVSLNNFGLKDEKLMSKMLEEINVVVNFAASTKFDERFDISMGVNTMGALHVLNFAKNCRQIKAFVHTSTAYVCGEIKDRKTIVQEKPFEMGQTLKETSKLDITAEMYLLKKKIDELRSENATENTIRYVMKDYGIERAKLYGWPNTYTFTKAMGEMQVVHHKDNVPLIIIRPTMVTSTLKDPFPGWIEGLRTLDSIICSYGQGKITSFLGHPKTILDTIPADMVVNCMMTAIVACSNQAQENFIYHVSSSLRNPFRIADVRDFSYRYFTKFSIRNKIGKPITVSKPTLISSRVAFDILMTVRYCLPLKVLNLVNEVFCQCSRDVYEDSYKRIKRVTRLVELYKPYLFFKGVFDDSNTQNLRRATSYNMEVDGLDFDPNSIDWEDYMMNTHIPGLVNYALK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0840 488 CDD FAR-N_SDR_e 8 359 - -
Vra2g0840 488 Gene3D - 2 366 - -
Vra2g0840 488 PANTHER MALE STERILITY PROTEIN 2-RELATED 3 485 IPR026055 GO:0080019
Vra2g0840 488 PANTHER FATTY ACYL-COA REDUCTASE 3 485 - -
Vra2g0840 488 CDD FAR_C 417 487 IPR033640 -
Vra2g0840 488 Pfam Male sterility protein 391 488 IPR033640 -
Vra2g0840 488 Pfam Male sterility protein 12 316 IPR013120 -
Vra2g0840 488 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 325 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0840 Vra-Chr2 7791666 7795501 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0840 3 440 Acyl Lipid Metabolism Gene Families AT3G44560 48.636 5.46e-150 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0840 K13356 - pvy:116144675 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0840 2 7791666 7795501 Vra2g0840 2 7791666 7795501 ECH
Vra4g0414 4 7043743 7049689 Vra2g0840 2 7791666 7795501 PCT