Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0404 ATGCTAGCAATGGGGGAATTCAAACACTTTGTAATTGTTAAGTTCAAGGAAGGTGTGGCAGTTGATGAGCTCACTAAAGGGATGGAGAAGTTGGTCTCAGAGATTGATGCTGTCAAGTCCTTTGAATGGGGAAGGGACATCGAAAGCTTAGATGTGCTGAGACAAGGTTTCACTCATGCCTTTTTAATGACATTCAACAAGAAAGAAGACTTTGCTGTGTTTCAAAGCCATCCAAATCATGTGGAGTTCTCCACAACATTTTCAGCAGCAATTGAGAACATTGTGCTTCTGGATTTCCCATCTACTCTTGTCAAGGCCCCAGCATGA 327 0.4251 MLAMGEFKHFVIVKFKEGVAVDELTKGMEKLVSEIDAVKSFEWGRDIESLDVLRQGFTHAFLMTFNKKEDFAVFQSHPNHVEFSTTFSAAIENIVLLDFPSTLVKAPA* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0404 108 PANTHER - 4 107 IPR044662 -
Vra4g0404 108 Gene3D - 3 108 - -
Vra4g0404 108 ProSiteProfiles Stress-response A/B barrel domain profile. 7 99 IPR013097 -
Vra4g0404 108 SMART Dabb_2 7 101 IPR013097 -
Vra4g0404 108 SUPERFAMILY Dimeric alpha+beta barrel 4 101 IPR011008 -
Vra4g0404 108 Pfam Stress responsive A/B Barrel Domain 8 100 IPR013097 -
Vra4g0404 108 PANTHER EXPRESSED PROTEIN 4 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0404 Vra-Chr4 6967712 6968498 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0404 - - pvu:PHAVU_005G126400g 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0404 4 6967712 6968498 Vra4g0404 4 6967712 6968498 ECH
Vra4g0404 4 6967712 6968498 Vra2g0825 2 7555813 7556741 PCT