Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0396 ATGCAGACTCTTTCGCCCCCAACTTCCAACGCGCTTAACCTCAACCACGTTGTACGCACGCGCCGCCTCCTACCAACCCGACTCTCCGTCAAATGCGCTTACGCGTTCGAACCGGCGAGCTACGGGGTCGGCTCGAGCCGAGCCGATTGGCAGAGCTCTTGCGCCATCTTAGCAAGCAAGGTCGTTTCTCAGGAACAAACCTCCTCAGCTGACAAGAACGGTGGCACTGCCGACCATGTCGCCGCCGTTAACGGCCACAAGGCAGCCGTCGGCGACTTCCAACTCGTTCCCATAGGAAACCTTGCCGAGGCCAACAACAAGCCGCTCCCGCCGAAGCCGCTTACAATCTCTGACCTATCCCCTGCGCCGATGCACGGCTCGAAGCTCAGAGTCGCTTACCAGGGCGTTCCCGGCGCGTACTCTGAGGCTGCAGCAGGGAAAGCCTATCCGAACTGCGAGGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCTGTGGAGCTTTGGATCGCCGATCGAGCGGTTTTACCGGTGGAAAACTCCCTCGGAGGCTCGATCCACCGCAACTACGACCTCCTACTTCGCCACCGCCTCCATATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCCCTCCCCGGCGTTCGCAAGGAATTCCTCACGCGCGTAATCTCGCATCCGCAGGCGCTCTCTCAGTGCGAGCACACGCTCACCAAACTCGGCCTCAACGTGGCGCGCGAGGCCGTCGACGATACCGCCGGCGCCGCCGAGTTCGTAGCCGCAAACAACCTCCGCGACACCGCCGCCATCGCGAGCTCGCGGGCGGCGGAGCTCTACGGCCTGAACGTGATGGCAGACGGCATCCAGGACGATCCAAGCAACGTGACGCGCTTCGTGATGCTGGCCAGAGAGCCTATCATCCCCCGCACCGACCGTCCTTTCAAGACGAGCATTGTTTTCGCGCATGACAAAGGCACCTCCGTGCTTTTCAAAGTGCTTTCCGCATTTGCTTTTCGCAACATCAGCTTGACGAAGATCGAGTCGCGGCCGCACCGTAACCGTCCCATTCGGCTTGTCGATGACGCTAACGTGGGAACCGCAAAGCACTTCGAGTACTTGTTCTACGTTGATTTTGAGGCTTCCATGGCTGAAGTTAGGGCTCAAAACGCGCTTGCAGAAGTTCAGGAATTCACCTCCTTCTTGCGAGTGCTCGGAAGTTACCCTATGGACATGACTCCCTGGACCCCTTCCTCCCCACCACATTGA 1278 0.6033 MQTLSPPTSNALNLNHVVRTRRLLPTRLSVKCAYAFEPASYGVGSSRADWQSSCAILASKVVSQEQTSSADKNGGTADHVAAVNGHKAAVGDFQLVPIGNLAEANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEFVAANNLRDTAAIASSRAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSSPPH* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0396 425 CDD ACT_CM-PDT 319 412 - -
Vra4g0396 425 Gene3D - 214 295 - -
Vra4g0396 425 Gene3D - 125 213 - -
Vra4g0396 425 CDD PBP2_Ct-PDT_like 128 309 - -
Vra4g0396 425 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Vra4g0396 425 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 17 423 - -
Vra4g0396 425 PANTHER AROGENATE DEHYDRATASE 17 423 - -
Vra4g0396 425 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Vra4g0396 425 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Vra4g0396 425 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Vra4g0396 425 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Vra4g0396 425 Gene3D - 314 415 - -
Vra4g0396 425 SUPERFAMILY ACT-like 302 414 IPR045865 -
Vra4g0396 425 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0396 Vra-Chr4 6880117 6881764 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0396 K05359 - gmx:100797636 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0396 4 6880117 6881764 Vra4g0396 4 6880117 6881764 ECH
Vra4g0396 4 6880117 6881764 Vra2g0817 2 7438620 7440481 PCT