Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0817 ATGCAGACCCTCACTCCACCGTGCGCTAACCCTATCAACTATCTCAACCGCCCGTCTCACTCCCTTATTCGGGTCGCTCCGATCCGATTTAGGGTCAAATGCGGTTACGGCTTCGAAACCGCGGGTTTCTCGCAAGGATTCGGCGCGAGTCGAGCCGATTGGCAAAGCTCGAACGCCATCTTAGCCAGTAAAATTATGTCGCAGAAGGAGGATTCTCCCGCCGGTGACAACAACCCTGCCTCCGTAAACGGCAATAACGCTGCTGTAACGAATCTAAATATCGTACCTGTCAAACACGACGGTGGCAACAGCAAGCCGCTTCCTCCGAAGCCGCTTTCGATCACCGACCTCTCCCCGGCACCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAAGGCGTTCCCGGAGCGTACTCGGAGGCCGCAGCGGGAAAAGCGTATCCAAAAGGGGAAGCCATACCGTGCGATCAGTTCGAGGTGGCTTTCCAGGCGGTGGAGCTCTGGATCGCGGATCGCGCGGTGCTGCCGGTTGAAAACTCCCTCGGCGGCTCGATACACCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCATATCGTCGGCGAGGTCCAGCTCCCGGTGCACCACTGCCTCCTGGCACTTCCCGGCGTCCGTAAGGAGTTCCTCACGCGCGTGATCTCGCATCCGCAGGCCTTAGCGCAGTGCGAGCACTCACTCACGAAACTCGGCCTAAACGTGGCGCGTGAGGCAGTCGACGACACTGCCGGCGCCGCGGAGTTCGTCGCGGCCAACGGCCTCCGCGACACGGCAGCAATCGCGAGTGCCCGCGCCGCAGAGCTCTACGGTTTGCAGGTCCTCGCAGACGGAATCCAGGACGATCCGAACAACGTGACACGGTTCGTGATGCTGGCTCGCGAACCGATCATTCCGCGCATGGATCGGCCATTCAAGACAAGCATCGTGTTCGCTCACGATAAGGGAACCTCTGTGCTTTTTAAAGTGCTTTCCGCGTTCGCGTTTAGAAACATTAGCTTGACGAAGATCGAGTCCAGGCCTCACCGTAGCCGTCCGATTCGCGTTGTCGATGATGAGAGCGAAGGAACCGCCAAACACTTCGAGTATTTGTTTTACATCGATTTTGAGGCTTCTATGGCGGAAGTTAGGGCTCAGAACGCCCTCGCTGAGGTTCAAGAATTCACCTCTTTCCTCCGAGTCTTGGGCAGTTACCCTATAGATATGACACCCTGGAACCCTTCTTGTCCCCGACAATATTAA 1275 0.5812 MQTLTPPCANPINYLNRPSHSLIRVAPIRFRVKCGYGFETAGFSQGFGASRADWQSSNAILASKIMSQKEDSPAGDNNPASVNGNNAAVTNLNIVPVKHDGGNSKPLPPKPLSITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPKGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLNVAREAVDDTAGAAEFVAANGLRDTAAIASARAAELYGLQVLADGIQDDPNNVTRFVMLAREPIIPRMDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRSRPIRVVDDESEGTAKHFEYLFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPIDMTPWNPSCPRQY* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0817 424 Gene3D - 123 211 - -
Vra2g0817 424 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 24 420 - -
Vra2g0817 424 ProSitePatterns Prephenate dehydratase signature 1. 281 303 IPR018528 GO:0004664|GO:0009094
Vra2g0817 424 Pfam Prephenate dehydratase 129 307 IPR001086 GO:0004664|GO:0009094
Vra2g0817 424 CDD ACT_CM-PDT 317 410 - -
Vra2g0817 424 ProSiteProfiles ACT domain profile. 319 410 IPR002912 -
Vra2g0817 424 SUPERFAMILY Periplasmic binding protein-like II 128 310 - -
Vra2g0817 424 PANTHER AROGENATE DEHYDRATASE 24 420 - -
Vra2g0817 424 ProSitePatterns Prephenate dehydratase signature 2. 345 352 IPR018528 GO:0004664|GO:0009094
Vra2g0817 424 Gene3D - 212 293 - -
Vra2g0817 424 Gene3D - 312 413 - -
Vra2g0817 424 SUPERFAMILY ACT-like 300 411 IPR045865 -
Vra2g0817 424 CDD PBP2_Ct-PDT_like 128 307 - -
Vra2g0817 424 ProSiteProfiles Prephenate dehydratase domain profile. 128 305 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0817 Vra-Chr2 7438620 7440481 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0817 K05359 - gmx:100809331 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0396 4 6880117 6881764 Vra2g0817 2 7438620 7440481 PCT