Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0381 ATGGCTTCGGCGCGATTGGATCTGGACGGGAACCCCATAAAGCCAATCACCATCTGCATGATAGGTGCAGGTGGCTTCATCGGGTCCCACCTCTGCGAGAAGCTCATGAACGAAACCCCTCACAAGGTTTTTGCTTTGGATGTTTATAACGACAAGATCAAACACCTTCTGGAACCCGACACGCTCCCCTGGGCTGGTCGCATCCAATTCCACCGCCTCAACATCAAGCACGATTCTCGACTTGAGGGCCTCATCAAGATTGCAGATCTGACCATTAACCTGGCTGCTATATGCACTCCCGCGGATTACAACACGCGCCCTCTCGACACCATTTACAGCAACTTCATCGACGCGCTTCCTGTGGTGAAGTACTGTTCGGAAAACAATAAGCGTCTCATTCACTTCTCTACCTGTGAAGTGTACGGGAAAACGATTGGAAGCTTTCTCCCCAAAGATAGTGCACTTCGTCAGGATCCTGCATACTACGTACTGAAGGAGGATGAGTCTCCTTGTATTTTTGGTTCGATTGAAAAGCAGAGATGGTCATATGCCTGTGCTAAGCAGTTGATTGAGAGGCTGATTTATGCTGAGGGCGCTGAAAATGGATTGGAATTCACAATTGTGAGGCCTTTTAATTGGATTGGACCAAGAATGGATTTCATTCCCGGCATTGATGGACCAAGTGAGGGTGTTCCTCGGGTTCTGGCATGCTTTAGCAATAATCTCCTCCGTGGTGAGCCCCTCAAGCTTGTGGATGGTGGCCAATCCCAGAGAACCTTTGTGTACATTAAGGATGCCATTGAAGCTGTCTTGCTGATGATTGAAAATCCTGCCAGGGCCAATGGACAGATTTTTAATGTGGGCAATCCAAACAACGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGTCTCAGGTTTATTCAAAGGTAAGTGGAGAAGCTCCTCTGGAAAAGCCTACTATTGATGTGAGCTCCAAAGAATTTTATGGCGAGGGATATGATGACAGCGACAAGAGAATTCCTGACATGACCATAATTAATAGGCAACTTGGCTGGAATCCTAAGACCTCACTTTGGGACCTGCTTGAATCAACTCTCACCTATCAGCACAGAACATACGCTGAAGCCATAAAGAAAGTGATTGCAAAGCCCGTGGCAAGTTAA 1164 0.4725 MASARLDLDGNPIKPITICMIGAGGFIGSHLCEKLMNETPHKVFALDVYNDKIKHLLEPDTLPWAGRIQFHRLNIKHDSRLEGLIKIADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSALRQDPAYYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRGEPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGQIFNVGNPNNEVTVRQLAEMMSQVYSKVSGEAPLEKPTIDVSSKEFYGEGYDDSDKRIPDMTIINRQLGWNPKTSLWDLLESTLTYQHRTYAEAIKKVIAKPVAS* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0381 387 Pfam NAD dependent epimerase/dehydratase family 18 288 IPR001509 -
Vra4g0381 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 17 370 IPR036291 -
Vra4g0381 387 PANTHER - 4 386 - -
Vra4g0381 387 CDD Arna_like_SDR_e 17 372 IPR045869 GO:0016831
Vra4g0381 387 Gene3D - 16 378 - -
Vra4g0381 387 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 4 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0381 Vra-Chr4 6709535 6712239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0381 16 382 Miscellaneous Gene Families AT1G02000 21.337 1.22e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0381 K12449 - gmx:100792879 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0381 4 6709535 6712239 Vra4g0381 4 6709535 6712239 ECH
Vra4g0381 4 6709535 6712239 Vra2g0806 2 7241271 7244068 PCT