Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0380 ATGGCGCATGCGAGTTATATTTTGATTTTCTTTCTTCTGGTTGTGGTGTTGAATGTGTATGTGGCTAAAGGGCAGCCTCTGGTTCCTGCATTGTTCATATTTGGGGACTCTGTGGTTGATGTGGGCAATAATAACGACTTATTAACCATTGTTAAAGCAAACTTCCCTCCTTATGGAAGAGACTTCAGTAATCACAGTTCAACAGGGAGGTTTTGCAATGGGAAGCTTGCAACAGACTACACAGCTGAAAACCTTGGATTTACCTCCTACCCACCAGCTTACCTTAACTTAAATGTTAAAGGAAGAAACCTCTTGAACGGTGCCAATTTTGCCTCTGCTGCTTCTGGCTACTACGATCCCACAGCTCAGCTTTATCATACAATTCCATTGAGCCAACAACTGGAACACTACAAAGAGAGCCAGAACATTTTGGTGGGAATAGTAGGGCAGGCAAATGCTTCGTCAATTGTATCTGGTGCTATACATCTTGTCAGCGCTGGAAACAGTGATTTTATTCAGAACTATTATATAAATCCACTGCTTTACAAACTTTACTCTGCTGATCAATTCTCAGATATTCTCATGCAACACTACTCCACTTTCATTCAGAATTTGTATGCACTTGGAGCAAGGAGAATTGGCGTCACAACGTTACCTCCTATGGGTTGTTTGCCAGCAGCCATCACTCTCTTTGGTTCTGGTAGCAACGAATGTGTGGTTAGACTAAACACTGATGCTGTTAACTTCAATAAGAAGCTAAACACTACGTCTCAAAGCTTGCAAAATTCGCTTTCTGGTCTGAAATTGGTCATCCTTGATATCTACCAACCTCTGTATGACCTTGTCACTAAGCCTTCCGAAAATGGTTTTTTTGAAGCAAGGAAGGCTTGTTGTGGAACAGGCTTGCTAGAGACATCTATATTGTGCAATAAAGAATCCGTAGGAACGTGTGTCAATGCATCTGAATATGTGTTCTGGGATGGTTTTCATCCCTCTGAGGCTGCAAACAAGGTTTTGTCCGGTGAATTGTTGGCTGCTGGCATCTCTCTCATATCCTAA 1059 0.4202 MAHASYILIFFLLVVVLNVYVAKGQPLVPALFIFGDSVVDVGNNNDLLTIVKANFPPYGRDFSNHSSTGRFCNGKLATDYTAENLGFTSYPPAYLNLNVKGRNLLNGANFASAASGYYDPTAQLYHTIPLSQQLEHYKESQNILVGIVGQANASSIVSGAIHLVSAGNSDFIQNYYINPLLYKLYSADQFSDILMQHYSTFIQNLYALGARRIGVTTLPPMGCLPAAITLFGSGSNECVVRLNTDAVNFNKKLNTTSQSLQNSLSGLKLVILDIYQPLYDLVTKPSENGFFEARKACCGTGLLETSILCNKESVGTCVNASEYVFWDGFHPSEAANKVLSGELLAAGISLIS* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0380 352 Pfam GDSL-like Lipase/Acylhydrolase 31 340 IPR001087 GO:0016788
Vra4g0380 352 CDD SGNH_plant_lipase_like 29 344 IPR035669 -
Vra4g0380 352 PANTHER GDSL-MOTIF LIPASE 11 351 - -
Vra4g0380 352 Gene3D SGNH hydrolase 20 348 IPR036514 -
Vra4g0380 352 SUPERFAMILY SGNH hydrolase 31 344 - -
Vra4g0380 352 PANTHER GDSL ESTERASE/LIPASE EXL3 11 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0380 Vra-Chr4 6696351 6698123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0380 21 340 Acyl Lipid Metabolism Gene Families AT4G10950 32.817 3.64e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0380 - - gmx:100804640 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0380 4 6696351 6698123 Vra4g0380 4 6696351 6698123 ECH
Vra4g0380 4 6696351 6698123 Vra2g0803 2 7206985 7209054 PCT