Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0376 ATGGCGGCAGCGGCTTTTGCAATATCCGTCGGGTTGTTGTTGTTGTTGTTGGCGGCGGTTGATGCCGGATCGCCGGTGAGTCTGCCGCTGGAAAGAGCGTTTCCGACGAATCACGGAGTGGAGTTGAGTCAGCTGAGAGCTCGCGATGCGTTGAGGCATCGCAGAATGTTGCAGTCTTCAAACGGCGTCGTTGATTTCCCCGTCCAAGGCACCTACGATCCCTTCCAAGTCGGGCTTTACTTTACAAAGGTACAGTTGGGTACTCCTCCAGTGGAGTTTTATGTGCAGATTGACACTGGCAGTGATGTTCTCTGGGTTAGTTGTAACTCCTGCAGTGGTTGTCCTCAGACAAGTGGGCTTCAGATTCAGCTAAATTTTTTTGACCCGGGGAGTTCCTCAACATCTTCACTGATCGCTTGTTCTGACCAAAGGTGCAACAGTGGCATACAGTCATCAGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCTCATACACATTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGATATGATGCATTTGAACACTATTTTTGAGGGTTCTGTGACCACCAATTCTACAGCGCCTGTAGTTTTTGGTTGTAGCAACCAGCAGAGTGGGGACTTGACAAAGTCTGATAGAGCAGTTGATGGAATATTTGGGTTTGGGCAACAGGAAATGTCTGTCATCTCCCAGCTCTCCTCACAGGGGATAGCTCCAAGAGTATTCTCTCATTGTCTGAAAGGAGATAGCAGTGGAGGGGGCATATTGGTTCTTGGTGAGATTGTGGAGCCAAACATAGTTTACACCTCACTTGTTCCAGCACAGCCTCATTACAACTTAAATCTACAGAGCATCTCTGTCAATGGCCAGACGTTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCGTATCTTGCTGAAGAGGCTTATGATCCCTTTGTCAATGCGATCACAGCTACAATTCCACAATCTGTACGCACTGTTGTTTCCAGGGGAAACCAGTGTTACTTACTCACCACTAGTGTCACTGACGTTTTTCCTCAAGTAAGTCTGAACTTTGCCGGTGGGGCATCTATGCTTTTAAGACCACAGGACTACCTGATACAGCAGAATTCTATTGGTGGTGCAGCAGTGTGGTGTATTGGTTTTCAAAAACTCCAGGGTCAAGGAGTAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTATGATCTGGCTGGTCAACGCATTGGATGGGCTAACTTTGACTGTTCTTTGTCAGTGAATGTCTCTGCAACAACTGGCACCGGCAGAAGTGAATTTGTGAATGCTGGAGAGGTAGGTGGAAGCATTTCCTTACGCGAAGGTCTTAAGTTGACAAAGACAGGGTTCTTGGCTTTCCTTGTGCATCTAACACTGATTTACTGCTTTGGATTCTTATAG 1488 0.4624 MAAAAFAISVGLLLLLLAAVDAGSPVSLPLERAFPTNHGVELSQLRARDALRHRRMLQSSNGVVDFPVQGTYDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCNSCSGCPQTSGLQIQLNFFDPGSSSTSSLIACSDQRCNSGIQSSDASCSSQNNQCSYTFQYGDGSGTSGYYVSDMMHLNTIFEGSVTTNSTAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQEMSVISQLSSQGIAPRVFSHCLKGDSSGGGILVLGEIVEPNIVYTSLVPAQPHYNLNLQSISVNGQTLQIDSSVFATSNNRGTIVDSGTTLAYLAEEAYDPFVNAITATIPQSVRTVVSRGNQCYLLTTSVTDVFPQVSLNFAGGASMLLRPQDYLIQQNSIGGAAVWCIGFQKLQGQGVTILGDLVLKDKIVVYDLAGQRIGWANFDCSLSVNVSATTGTGRSEFVNAGEVGGSISLREGLKLTKTGFLAFLVHLTLIYCFGFL* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0376 495 PANTHER ASPARTYL PROTEASES 19 456 IPR001461 GO:0004190|GO:0006508
Vra4g0376 495 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Vra4g0376 495 PRINTS Pepsin (A1) aspartic protease family signature 313 324 IPR001461 GO:0004190|GO:0006508
Vra4g0376 495 PRINTS Pepsin (A1) aspartic protease family signature 411 426 IPR001461 GO:0004190|GO:0006508
Vra4g0376 495 SUPERFAMILY Acid proteases 75 442 IPR021109 -
Vra4g0376 495 Pfam Xylanase inhibitor N-terminal 80 265 IPR032861 -
Vra4g0376 495 Gene3D Acid Proteases 54 266 IPR021109 -
Vra4g0376 495 Gene3D Acid Proteases 267 446 IPR021109 -
Vra4g0376 495 Pfam Xylanase inhibitor C-terminal 283 435 IPR032799 -
Vra4g0376 495 CDD pepsin_A_like_plant 80 439 IPR034161 -
Vra4g0376 495 ProSiteProfiles Peptidase family A1 domain profile. 80 435 IPR033121 -
Vra4g0376 495 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 19 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0376 Vra-Chr4 6647840 6651955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0376 54 440 Miscellaneous Gene Families AT1G44130 27.363 1.85e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0376 - K00924 gmx:100791299 918.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0376 4 6647840 6651955 Vra4g0376 4 6647840 6651955 ECH
Vra4g0376 4 6647840 6651955 Vra2g0799 2 7176787 7181590 PCT