Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0799 ATGGAAGCGGTGGCCGCCGTTTTTCTATTCGCCACCGCACTTCTGTCGGTGGTGGAGGGGTCGCCGGTGACTCTGACACTGGAAAGAGCGTTTCCTTCGAATCATGGCGTGGAGTTGAGTCAGCTCAGAGCGCGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTATGTCGTAGATTTCCCTGTCAAAGGCACCTTCGATCCCTCAGAAGTCGGGCTTTACTATACCAAAGTAAAAATGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGGAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAATGGTTGTCCTCAGACAAGTGGGCTGCAAATTCAGCTCAATTACTTTGACCCTAGGAGTTCATCAACATCTTCATTGATCTCTTGTTCTGACCGGAGGTGCAGGAACGGAGTTCAGTCCTCCGATGCAAGCTGTTCCAGTCAGAACAACCAGTGCATTTACACGTTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGACTTGATGCATTTTGCTAGTATTTTTGAGGGAACCTTGACAACAAATGCTTCTGCATCTGTAGTTTTTGGTTGTAGCATCCAGCAAACTGGGGACTTAACAAAGTCTGAGAGAGCAGTTGATGGGATATTTGGATTCGGGCAACAAGGCATGTCTGTCATTTCCCAACTCTCATCGCAAGGAATTGCACCAAGAGTGTTCTCTCATTGCTTAAAAGGAGATAACAATGGTGGAGGTGTCTTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATACTCCACTTGTTCCATCGCAGCCTCATTACAATTTATATCTGCAGAGCATCTCTGTCAATGGCCAGTTTTTGCAAATTAACCCTGCAGTTTTTGCTACATCAAGCAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGTCCTACCTTGCAGAAGAGGCTTATACAACCTTTGTGAATGCGATTACAGCTGCTATTCCACAATCTGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGCACTGTTGACATGTTTCCACAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACTGGACTACCTTATTCAACAGAATTATATTGGTGAGGGTTCAGTTTGGTGTATTGGCTTTCAGAAAATCCCTGGTCAAAGTGTAACTATTCTAGGAGATCTCGTATTAAAAGACAAAATTTTTGTCTACGATGTTGCTGGTCAACGCATAGGATGGACTGACTATGATTTGAATGTATCTGCATCAGCTGGTAGGGGCAGAAGTGAGTTTGTAGATGCAGGAGAGCTAGGTGGAAGCACTTCTTTATGTGAAGGACCTCACACTTTGATAAGGACGTTGTTGCTTGCTCTGTTCATGCACATAACACTAATTTTGTAG 1458 0.4472 MEAVAAVFLFATALLSVVEGSPVTLTLERAFPSNHGVELSQLRARDSLRHRRMLQSTNYVVDFPVKGTFDPSEVGLYYTKVKMGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPRSSSTSSLISCSDRRCRNGVQSSDASCSSQNNQCIYTFQYGDGSGTSGYYVSDLMHFASIFEGTLTTNASASVVFGCSIQQTGDLTKSERAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNNGGGVLVLGEIVEPNIVYTPLVPSQPHYNLYLQSISVNGQFLQINPAVFATSSNRGTIVDSGTTLSYLAEEAYTTFVNAITAAIPQSVRSVLSRGNQCYLITTSSTVDMFPQVSLNFAGGASLVLRPLDYLIQQNYIGEGSVWCIGFQKIPGQSVTILGDLVLKDKIFVYDVAGQRIGWTDYDLNVSASAGRGRSEFVDAGELGGSTSLCEGPHTLIRTLLLALFMHITLIL* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0799 485 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Vra2g0799 485 Gene3D Acid Proteases 51 263 IPR021109 -
Vra2g0799 485 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Vra2g0799 485 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Vra2g0799 485 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Vra2g0799 485 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Vra2g0799 485 SUPERFAMILY Acid proteases 74 437 IPR021109 -
Vra2g0799 485 CDD pepsin_A_like_plant 77 432 IPR034161 -
Vra2g0799 485 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 450 - -
Vra2g0799 485 PANTHER ASPARTYL PROTEASES 5 450 IPR001461 GO:0004190|GO:0006508
Vra2g0799 485 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Vra2g0799 485 Gene3D Acid Proteases 264 443 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0799 Vra-Chr2 7176787 7181590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0799 51 438 Miscellaneous Gene Families AT1G44130 26.667 7.03e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0799 - K00924 gmx:100789004 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0799 2 7176787 7181590 Vra2g0799 2 7176787 7181590 ECH
Vra4g0376 4 6647840 6651955 Vra2g0799 2 7176787 7181590 PCT