Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra4g0361 ATGTCCTTGCTACCTTCCTCTTTCTTCTCTTTTCTTTTATTCTCAATCGTGATTCGTTGTAGTACTGCTCAGGGTCCACCTTCCCCTGGCTACTACCCTAGTTCCAAAATTAGTCCCGTTGCCTTTGGTGAGGGATTTAAAAACCTTTGGGGACCTCAGCATCAGAAAGTAGACCAAGACTCATTAACAATCTGGCTTGACACTTACACAGGGAGTGGATTCAAGTCACTTCACTCTTACCGATCCGGATACTTTGGTGCTGCGGTTAAGCTCCAACCTGGTTATACAGCAGGGGTCATAACATCTTTATACCTTTCAAACAACCAAGACTACCCCGGCAACCATGACGAAATAGACATTGAATTCCTTGGTACCACGCCAGATAAGCCATATGTCTTGCAGACAAATGTGTTCATCAGAGGAAGTGGAGATGGGAACATTATAGGGAGAGAGATGAGGTTTCACCTTTGGTTCGACCCAACAGAAGATTTTCACAACTACGCTATTCTATGGGAACCCAGTGAGATCATCTTTTTGGTGGATGATGTTCCAATAAGAAGGTATCCTAGGAAGAGTGATGCCACGTTCCCCGCAAGAGAAATGCATGTGTACGGATCCATATGGGATGCTTCTTCATGGGCTACAGAGGGTGGAAAATACAAAGCTGATTATAAATACCAACCCTTCATTGGTCAATACAAAAATTTCAAACTCGAAGGTTGCACCACTGAAGCCTCCACCTCATGCCAGCCACCTTCAGCCTCACCATTAGGGTATGGAAGCCTGAGCCCTCAGCAACTTGCTGCAATGCAATGGGTCCAAAACAACCACTTGGTCTATGACTATTGCCATGATCCTGGGAGAGACCACACCCTTACTCCAGAATGTTAA 891 0.4523 MSLLPSSFFSFLLFSIVIRCSTAQGPPSPGYYPSSKISPVAFGEGFKNLWGPQHQKVDQDSLTIWLDTYTGSGFKSLHSYRSGYFGAAVKLQPGYTAGVITSLYLSNNQDYPGNHDEIDIEFLGTTPDKPYVLQTNVFIRGSGDGNIIGREMRFHLWFDPTEDFHNYAILWEPSEIIFLVDDVPIRRYPRKSDATFPAREMHVYGSIWDASSWATEGGKYKADYKYQPFIGQYKNFKLEGCTTEASTSCQPPSASPLGYGSLSPQQLAAMQWVQNNHLVYDYCHDPGRDHTLTPEC* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra4g0361 296 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 233 IPR000757 GO:0004553|GO:0005975
Vra4g0361 296 SUPERFAMILY Concanavalin A-like lectins/glucanases 41 296 IPR013320 -
Vra4g0361 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 9 296 - -
Vra4g0361 296 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 296 IPR044791 GO:0004553
Vra4g0361 296 PIRSF EndGlu_transf 7 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vra4g0361 296 Gene3D - 22 296 - -
Vra4g0361 296 Pfam Glycosyl hydrolases family 16 44 225 IPR000757 GO:0004553|GO:0005975
Vra4g0361 296 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 259 296 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra4g0361 Vra-Chr4 6466247 6468636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra4g0361 9 296 Glycoside Hydrolase AT3G44990 65.292 2.68e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra4g0361 K08235 - gmx:100796768 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0361 4 6466247 6468636 Vra4g0361 4 6466247 6468636 ECH
Vra4g0361 4 6466247 6468636 Vra2g0770 2 6874077 6875932 PCT