Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g0770 ATGCCATCATCACTATCCTCTTTCCTCCCAATGGTTGTTCCTGTTCTCTTCCTTCTTGCACTCTCATGTATGATTTATTCTGGTTATGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTAGTCCTATTAGCTTCAATCGAGGCTTTAAAAACCTTTGGGGACCTCAGCATCAGAGAATAGACCAAGGCTCATTGACAATATGGCTAGACACTAGCACTGGGAGTGGATTCAAGTCACTTCACTCTTACAAGTCTGGATACTTTGGTGCTGCAATTAAGCTTCATCCTGGTTACACTGCAGGAGTCATTACATCTCTCTACCTTTCAAACAACCAAGACCACCCCGGAAACCATGATGAAATTGACATAGAGTTCCTTGGTACCACGCCGGACAAGCCATATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGAGATGGGAATATTATAGGAAGAGAAATGAGGTTTCATCTCTGGTTTGACCCAACACAGGATTTTCACAACTATGCAGTTCTATGGAAACCCTCTGAGTTAATATTTTTTGTGGATGATGTCCCAATAAGAAGGTATCCAAGGAAAAGTGAGGCCACATACCCTACAAGGCCAATGTATGTGTATGGGTCAATATGGGATGCATCTTCTTGGGCAACAGAGGGTGGAAAATACAAAGCTGATTACAGATACCAACCCTTCATTGGTAGGTACAAAAACTTCAGACTTCAAGGTTGCACCAGTGAAAGCTCTGCCTCATGCCACCCACCTTCTGCATCTCCTTCTGGCTTTGGAAGTCTGAGCCCTCAGCAGTTCAGGGCCATGCAATGGGTCCAAACCAACTACATGGTGTACAACTATTGCCATGATCCTAGGAGAGACCACAATCTGATCCCAGAATGCTAA 912 0.4441 MPSSLSSFLPMVVPVLFLLALSCMIYSGYAQGPPSPGYYPSSKISPISFNRGFKNLWGPQHQRIDQGSLTIWLDTSTGSGFKSLHSYKSGYFGAAIKLHPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMRFHLWFDPTQDFHNYAVLWKPSELIFFVDDVPIRRYPRKSEATYPTRPMYVYGSIWDASSWATEGGKYKADYRYQPFIGRYKNFRLQGCTSESSASCHPPSASPSGFGSLSPQQFRAMQWVQTNYMVYNYCHDPRRDHNLIPEC* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g0770 303 PIRSF EndGlu_transf 10 303 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vra2g0770 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 15 303 - -
Vra2g0770 303 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 40 240 IPR000757 GO:0004553|GO:0005975
Vra2g0770 303 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 15 303 IPR044791 GO:0004553
Vra2g0770 303 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 303 IPR013320 -
Vra2g0770 303 Pfam Glycosyl hydrolases family 16 50 232 IPR000757 GO:0004553|GO:0005975
Vra2g0770 303 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 268 303 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Vra2g0770 303 Gene3D - 29 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g0770 Vra-Chr2 6874077 6875932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g0770 11 303 Glycoside Hydrolase AT3G44990 66.553 1.87e-146 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra2g0770 K08235 - gmx:100781528 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g0770 2 6874077 6875932 Vra2g0770 2 6874077 6875932 ECH
Vra4g0361 4 6466247 6468636 Vra2g0770 2 6874077 6875932 PCT